Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G64300 647 / 0 ATGCH, ATRIBA1, RFD1 RED FLUORESCENT IN DARKNESS 1, Arabidopsis thaliana riboflavin A1, ARABIDOPSIS THALIANA GTP CYCLOHYDROLASE II, GTP cyclohydrolase II (.1) AT2G22450 537 / 0 riboflavin biosynthesis protein, putative (.1) AT5G59750 520 / 0 DHBP synthase RibB-like alpha/beta domain;GTP cyclohydrolase II (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G097300 [exp] 717 / 0 AT5G64300 773 / 0.0 RED FLUORESCENT IN DARKNESS 1, Arabidopsis thaliana riboflavin A1, ARABIDOPSIS THALIANA GTP CYCLOHYDROLASE II, GTP cyclohydrolase II (.1) Potri.001G310500 [exp] 667 / 0 AT5G64300 764 / 0.0 RED FLUORESCENT IN DARKNESS 1, Arabidopsis thaliana riboflavin A1, ARABIDOPSIS THALIANA GTP CYCLOHYDROLASE II, GTP cyclohydrolase II (.1) Potri.017G050400 [exp] 624 / 0 AT5G64300 714 / 0.0 RED FLUORESCENT IN DARKNESS 1, Arabidopsis thaliana riboflavin A1, ARABIDOPSIS THALIANA GTP CYCLOHYDROLASE II, GTP cyclohydrolase II (.1) Potri.001G234900 [exp] 534 / 0 AT5G59750 770 / 0.0 DHBP synthase RibB-like alpha/beta domain;GTP cyclohydrolase II (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012751 [exp] 681 / 0 AT5G64300 755 / 0.0 RED FLUORESCENT IN DARKNESS 1, Arabidopsis thaliana riboflavin A1, ARABIDOPSIS THALIANA GTP CYCLOHYDROLASE II, GTP cyclohydrolase II (.1) Lus10025733 [exp] 673 / 0 AT5G64300 757 / 0.0 RED FLUORESCENT IN DARKNESS 1, Arabidopsis thaliana riboflavin A1, ARABIDOPSIS THALIANA GTP CYCLOHYDROLASE II, GTP cyclohydrolase II (.1) Lus10035929 [exp] 672 / 0 AT5G64300 763 / 0.0 RED FLUORESCENT IN DARKNESS 1, Arabidopsis thaliana riboflavin A1, ARABIDOPSIS THALIANA GTP CYCLOHYDROLASE II, GTP cyclohydrolase II (.1) Lus10023161 [exp] 668 / 0 AT5G64300 744 / 0.0 RED FLUORESCENT IN DARKNESS 1, Arabidopsis thaliana riboflavin A1, ARABIDOPSIS THALIANA GTP CYCLOHYDROLASE II, GTP cyclohydrolase II (.1) Lus10040865 [exp] 515 / 1e-178 AT5G59750 714 / 0.0 DHBP synthase RibB-like alpha/beta domain;GTP cyclohydrolase II (.1.2) Lus10006669 [exp] 454 / 3e-157 AT5G64300 513 / 5e-179 RED FLUORESCENT IN DARKNESS 1, Arabidopsis thaliana riboflavin A1, ARABIDOPSIS THALIANA GTP CYCLOHYDROLASE II, GTP cyclohydrolase II (.1) Lus10007013 [exp] 447 / 1e-152 AT5G64300 506 / 4e-174 RED FLUORESCENT IN DARKNESS 1, Arabidopsis thaliana riboflavin A1, ARABIDOPSIS THALIANA GTP CYCLOHYDROLASE II, GTP cyclohydrolase II (.1) Lus10005882 [exp] 427 / 8e-147 AT5G59750 502 / 2e-175 DHBP synthase RibB-like alpha/beta domain;GTP cyclohydrolase II (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00926 [poplar] [flax] DHBP_synthase 3,4-dihydroxy-2-butanone 4-phosphate synthase
Representative CDS sequence Show only first row Show all	>Potri.005G071600.3 pacid=42804277 polypeptide=Potri.005G071600.3.p locus=Potri.005G071600 ID=Potri.005G071600.3.v4.1 annot-version=v4.1 ATGATGAATATGACCTCGATCGTCCTACGGAAGGATGTGCCTCAATCCCAGAGGCCATTGAGGATATTCATCAAGGAAAGGATCATGGTAATTGTTGTAG ATGATGAGGACAGAGAAAATGAGGGAGACCTTATAATGGCAGCATCAAAGGCAACACCAGAAGCTATGGCATTCATTGTCAAACATGGAACTGGTATAGT GTGTGTGAGCATGAAAGCAGAAGATTTAGAAAGATTGGAACTTCCTTTAATGGTAACTCATAAGGAGAACGAGGAAAAACTGTGCACCGCATTCGCTGTA TCGGTGGATGCAAAACATGGCACATCAACAGGTGTCTCAGCTCGTGATAGGGCAACAACCACAGTAGCTCTTGCCTCCAAAGATTCAAAACCTGAAGATT TCAATCGCCCAGGCCATATTTTCCCACTCAAGTACAGGGAGGGTGGTGTTCTAAAAAGAGCTGGACACACAGAAGCCTCAGTTGATCTTGCAATGCTGGC TGGGTTGGAGCCTGTTGCTGTTTTATGTGAGATAGTGGATGATGATGGCTCTATGGCAAGATTACCAAGGCTTCGTCAATTTGCACAGGCGGAAAACTTA AAAATCATTTCAATTGCTGATCTAATCAGATATAGGAGGAGAAGAGATAGATTGGTGGAGCTGGCTGCTGCAGCTCCAATACCCACAATGTGGGGGCCAT TCAAAGCCTACTGTTATAGGTCATTGCTGGATGGGATTGAGCATATTGCAATGGTCAAAGGTGAAATTGGGGGTGGGAAAGATATTCTGGTGCAGGTACA TTCCGAGTGCCTCACAGGCGACATTTTTGGATCAGCTAGATGTGATTGTGGGAACCAGCTAGCACTTGCAATGAAGCAAATCGAGGAAGCTGGCAGGGGT GTTCTGCTGTATCTCCGTGGACATGAAGGTAGAGGAGTTGGCTTGGGTCACAAGCTCCCTGCTTATAACCTTCAAATTGATGGACGAGATACAGTTGAAG CCAACAAGGATCTGGGTTTACCTGTCGATTCTCGCGAATATGGCATTGGTGCACAGATGTTGAGAGATCTGGGTGTTCGAACAATGAAACTGATGACAAA TAATCCAGCCAAATATGTTGGGCTCAAAGGCTATGGTTTGGCAGTTGCAGGCAGGGTCCCCCTGTTGACACCAATAACCATGGAAAACAAGAGATATTTG GAAACTAAACGTGAAAAAATGGGGCATATATATGGTTCAGATAGTGGCCTTGTGAACGGTCTTATCGGTGAAAACGATAATTCAACCACCGGCAGCCTGT CCGATGGTGTATGA
AA sequence Show only first row Show all	>Potri.005G071600.3 pacid=42804277 polypeptide=Potri.005G071600.3.p locus=Potri.005G071600 ID=Potri.005G071600.3.v4.1 annot-version=v4.1 MMNMTSIVLRKDVPQSQRPLRIFIKERIMVIVVDDEDRENEGDLIMAASKATPEAMAFIVKHGTGIVCVSMKAEDLERLELPLMVTHKENEEKLCTAFAV SVDAKHGTSTGVSARDRATTTVALASKDSKPEDFNRPGHIFPLKYREGGVLKRAGHTEASVDLAMLAGLEPVAVLCEIVDDDGSMARLPRLRQFAQAENL KIISIADLIRYRRRRDRLVELAAAAPIPTMWGPFKAYCYRSLLDGIEHIAMVKGEIGGGKDILVQVHSECLTGDIFGSARCDCGNQLALAMKQIEEAGRG VLLYLRGHEGRGVGLGHKLPAYNLQIDGRDTVEANKDLGLPVDSREYGIGAQMLRDLGVRTMKLMTNNPAKYVGLKGYGLAVAGRVPLLTPITMENKRYL ETKREKMGHIYGSDSGLVNGLIGENDNSTTGSLSDGV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G64300		ATGCH, ATRIBA1,...	RED FLUORESCENT IN DARKNESS 1,...		Potri.005G071600 [exp]	0	1
AT5G15380		DRM1	domains rearranged methylase 1...		Potri.001G347000 [exp]	1.41	0.7851
AT3G51950	C3HZnF		Zinc finger (CCCH-type) family...		Potri.001G020300 [exp]	6.32	0.7408
AT1G54490		ATXRN4, XRN4, E...	ETHYLENE INSENSITIVE 5, ACC IN...		Potri.013G035600 [exp]	7.48	0.7669	XRN4.2
AT1G15130			Endosomal targeting BRO1-like ...		Potri.010G116400 [exp]	8.94	0.7309
AT1G30970	C2H2ZnF	SUF4	suppressor of FRIGIDA4, zinc f...		Potri.001G160700 [exp]	9.74	0.7321
AT5G56890			Protein kinase superfamily pro...		Potri.018G068100 [exp]	11.66	0.7447
AT5G02520			unknown protein		Potri.004G077400 [exp]	13.85	0.7380
AT1G79030			Chaperone DnaJ-domain superfam...		Potri.011G142000 [exp]	17.23	0.7233
AT5G12430		TPR16	tetratricopeptide repeat 16, H...		Potri.009G050200 [exp]	18.89	0.7604
AT5G05570			transducin family protein / WD...		Potri.010G187700 [exp]	21.44	0.7011

Compare expression of checked genes

Potri.005G071600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.