Plant FIBer expression Database

Potri.005G071700 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G62450 110 / 5e-34 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10021958
[exp]
119 / 3e-37 AT3G62450 117 / 2e-36 unknown protein
PFAM info
Representative CDS sequence
>Potri.005G071700.2 pacid=42803608 polypeptide=Potri.005G071700.2.p locus=Potri.005G071700 ID=Potri.005G071700.2.v4.1 annot-version=v4.1
ATGAAGTTTTTAGATTGGTACGTGAAAATATCAGCTGCTGGTGCTTTAATTGGAGCTTCTATGGAGTTGTTCATGATCAAGACTGGCTTCTATGATAAGG
TTACTGTTCTAGAGTCAGAGAAGCGGGCTTGGGAAAGCTCCCCTGAAGCTCAGGCAATCAGAGAAGCTCTAAACCCTTGGAGAAACCAAGACACAGAACA
AAGAAAAAATACCTAA
AA sequence
>Potri.005G071700.2 pacid=42803608 polypeptide=Potri.005G071700.2.p locus=Potri.005G071700 ID=Potri.005G071700.2.v4.1 annot-version=v4.1
MKFLDWYVKISAAGALIGASMELFMIKTGFYDKVTVLESEKRAWESSPEAQAIREALNPWRNQDTEQRKNT

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G62450 unknown protein Potri.005G071700
[exp]
0 1
AT4G20380 LSD1 LESION SIMULATING DISEASE, LSD... Potri.011G154800
[exp]
2.00 0.8212 LSD1.2
AT5G57950 26S proteasome regulatory subu... Potri.006G184600
[exp]
3.16 0.8353
AT1G68310 AE7 AS1/2 ENHANCER7, Protein of un... Potri.003G098000
[exp]
7.14 0.8077
AT1G65032 unknown protein Potri.005G094100
[exp]
10.00 0.7706
AT1G31340 NEDD8, ATRUB1, ... ARABIDOPSIS THALIANA RELATED T... Potri.005G096700
[exp]
11.22 0.7617 Pt-UBQ7.2
AT1G73030 CHMP1A, VPS46.2 CHARGED MULTIVESICULAR BODY PR... Potri.006G158538
[exp]
12.96 0.7632
AT1G79200 unknown protein Potri.007G068500
[exp]
17.94 0.7107
AT2G24860 DnaJ/Hsp40 cysteine-rich domai... Potri.018G016400
[exp]
18.33 0.7368
AT1G19360 RRA3 reduced residual arabinose 3, ... Potri.014G042700
[exp]
22.60 0.6554
AT1G79390 unknown protein Potri.008G081400
[exp]
23.23 0.6971

Potri.005G071700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.