Plant FIBer expression Database

Potri.005G072000 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G65300 41 / 6e-05 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.007G097000
[exp]
218 / 2e-73 AT5G65300 / unknown protein
Potri.005G161700
[exp]
58 / 8e-11 AT1G35210 50 / 6e-08 unknown protein
Potri.002G100500
[exp]
47 / 1e-06 AT1G35210 47 / 4e-07 unknown protein
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10035928
[exp]
54 / 4e-09 ND /
Lus10025734
[exp]
54 / 6e-09 ND /
PFAM info
Representative CDS sequence
>Potri.005G072000.3 pacid=42802576 polypeptide=Potri.005G072000.3.p locus=Potri.005G072000 ID=Potri.005G072000.3.v4.1 annot-version=v4.1
ATGGCAAGAAAGATAAACATGAGTTGTCACTTAAAAGCAAATTCAAAGTTAGGTTCGATCATCACAGAGAAAATACAAACCATGGGAGTTTCTGAGCCAG
GAAAAGTATGCAAGAATCATCCATATCACGATCAGAAACAAGGGGTTTGTGCATCATGTTTAAGAGATAGATTAACGCAGCTAATCTATGTCAATACTTT
ACAATCAGCAGTGCTTGCACCTCCTTCATCATCATCTTCTCCTGATCATCCCTACTCTTTTGTTGCCTCTACAAACCATGTATCTCGCCGCCAGCATCAC
CGGAACATTTCAGATAATTATAATATGGGTTCAGTATCTTTCAGGGTAAGTGTCGGTAACCGCTTGAAGAAGAGTAGATCAATTGCTTTTGTGACAAGAA
ACCATACTGGAGAGGTAAAAAATGGGAAGAAGAGTAATGGGTTCTGGACTAAGTTGCTTCATTTGAAGGGAAAGAAGGATCGGGTTTTGATGCGTTCTGC
TGTCTCTATGAATGAAAGGTTGTATTAA
AA sequence
>Potri.005G072000.3 pacid=42802576 polypeptide=Potri.005G072000.3.p locus=Potri.005G072000 ID=Potri.005G072000.3.v4.1 annot-version=v4.1
MARKINMSCHLKANSKLGSIITEKIQTMGVSEPGKVCKNHPYHDQKQGVCASCLRDRLTQLIYVNTLQSAVLAPPSSSSSPDHPYSFVASTNHVSRRQHH
RNISDNYNMGSVSFRVSVGNRLKKSRSIAFVTRNHTGEVKNGKKSNGFWTKLLHLKGKKDRVLMRSAVSMNERLY

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G65300 unknown protein Potri.005G072000
[exp]
0 1
AT5G13080 WRKY ATWRKY75, WRKY7... ARABIDOPSIS THALIANA WRKY DNA-... Potri.015G099200
[exp]
3.60 0.9345
AT4G27410 NAC RD26, ANAC072 NAC (No Apical Meristem) domai... Potri.011G123300
[exp]
9.79 0.9446 Pt-ATNAC3.2,NAC036
AT1G25340 MYB ATMYB116 myb domain protein 116 (.1.2) Potri.015G046200
[exp]
12.64 0.9499
AT4G27410 NAC RD26, ANAC072 NAC (No Apical Meristem) domai... Potri.001G404100
[exp]
17.66 0.9348 Pt-ATNAC3.1
AT1G67920 unknown protein Potri.012G044001
[exp]
18.22 0.9494
AT5G47390 MYB myb-like transcription factor ... Potri.003G079500
[exp]
23.83 0.8942
AT3G26430 GDSL-like Lipase/Acylhydrolase... Potri.002G083800
[exp]
28.84 0.9399
AT5G48100 LAC15, TT10, AT... TRANSPARENT TESTA 10, LACCASE-... Potri.005G200600
[exp]
33.68 0.9394
AT1G29640 Protein of unknown function, D... Potri.011G076900
[exp]
40.39 0.9388
AT5G63380 AMP-dependent synthetase and l... Potri.010G057000
[exp]
44.72 0.9236 Ptr4CL12

Potri.005G072000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.