Plant FIBer expression Database

Potri.005G072100 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G65290 924 / 0 LMBR1-like membrane protein (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.007G096900
[exp]
1271 / 0 AT5G65290 985 / 0.0 LMBR1-like membrane protein (.1.2)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10025735
[exp]
1116 / 0 AT5G65290 1004 / 0.0 LMBR1-like membrane protein (.1.2)
Lus10035927
[exp]
1115 / 0 AT5G65290 1001 / 0.0 LMBR1-like membrane protein (.1.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF04791 LMBR1 LMBR1-like membrane protein
Representative CDS sequence
>Potri.005G072100.1 pacid=42802637 polypeptide=Potri.005G072100.1.p locus=Potri.005G072100 ID=Potri.005G072100.1.v4.1 annot-version=v4.1
ATGTGGGTGCTTTATTTGATATGGTTACCTCTAACACTAGGCATGGTGATTTTAACTGCCAGATACTTCGCAGGACCTGAGGTTCCTCGGTATGTCTTCT
TCACTGTCGGATACACCTGGTTCTGTTCTCTCTCCATCATCATCCTCGTCCCTGCCGATATCTACACGACTAAATTTGATCTTGATCGCGAAGGCATTTC
TTTCTTTTGGAGTTGGTCGTATTGGAGTACATTTTTACTGACCTGGGGTGCGGTGCCCCTTATTCAGGGTTTTGAAGATGCAGGAGATTTTACCGTGATG
GAAAGATTAAAGACTAGTGTACGTGCAAACTTAGTCTTCTATTTAATTGTGGGAGCCATTGGCCTCTTTGGATTTATTCTTCTCATCACGATGAACAAGA
TAAGGATTGGAAACGTGCTTGCTGTTGCCATGGCCTGCTCAAATACTTTTGGACTTGTTACTGGTGCATTTCTTCTTGGTTTTGGTTTGAGTGAAATTCC
CAAGAGCCTGTGGAGAAATTCAGAGTGGTCAGTCCGCCAAAAAGTACTTTCTCATAAAATTGCCAAAATGGCTGTGAAACTTGATGATGCTCATCAAGAT
CTTTCAAATGCTATTGTAGTTGCTCAAGCAACATCCAATCAGATGTCCAAGCGTGACCCTTTGAGGCCCTACATGGATGTTATTGATAATATGCTAGCAC
AAATGTTTAAGCAAGACCCATCCTTTAAACCACAAGGTGGTCGGTTGGGAGAAAATGATATGGACTTTGACACGGATGAGAAATCAATGGCAACACTCAG
GCGTCATCTTCAAGGAGCTCGAGAAGAGTATTATCGCTGTAGAAGCGAGTATATGACCTATGTCATGGAAGCGCTTGAACTGGAAGACACTGTTAAAAAC
TATGAACGCAGCAGTTCAACTGGATGGAAATATATTTCAAGCTTCAGGCCTGCTCGCACTGGGAAGTTGGGTGCTTCCTTTGATAGAATGGAATTTTTGT
GGCAATGCATCTTAAGAAAGCAACTTGAGAAGGTGTTGGCTGTCATACTTGGCACCATGTCAGCTACAATTCTTTTAGCAGAGGCAACTATACTAATTGG
TGGAGTTGATCTCTCTCTATTTTCAATCCTTATAAACTCTGCAGGAAAACAAGAGCTACCTATGCAGGTTTTGGCTTTTGTACCTTTGATGTATATGTGC
ATCTGCACATACTACTCCTTGTTCAAAATCGGAATGTTAATGTTTTACTCTTTAACACCTAGGCAGACAAGTTCAGTCAGCTTGCTTATGATATGCTCGA
TGGTTGCTCGATATGCTCCTCCAATTTCGTACAATTTTCTCAACCTCATTAATCTGGATCCTAAGCAAACTATATTTGAGAAGCGAATGGGAAAAATCGA
CAATGCCGTCCCTTTCTTTGGAAATGATTTTAACAGAATCTATCCACTTATTATGGTTATATACACCCTGTTGGTTGCGAGCAATTTCTTTGATCGTGTG
ATTGGTTTCTTTGGGAGCTTGAATAGATTTAGGTTTCAAACTGAGGCAGATGGTACTGATGGATTTGATCCATCGGGATTAATTATCCTACAAAAAGAAA
GATCTTGGTTGGATCAAGGACTAAAAGTTGGTGAGCTGGTTGTGCCACTGGCAAGAAACTTTAACGGTGTTGATGTGGAGACTGGCAGCAACAGTACAGA
TAGGACTGCCGCTGGAATGAAGGCAACGAGCAGTTTAGCCTCTGATGAGAGGAAGGGAAGTCGAGCCAGACCCTTGAAAGAAAGTCAGAGATACAACACA
AGCAAAGAAGCCATCAGTAACAAGTATGCTGCTGTTAGAGCACAGAGCAGGCATGCCAATACAAGGCCGGTGGAGAACATTGCCTCTGCAAAGGTGCCAT
TGCTTGATGCTGGCAGCTCTCACTCCCACAACACGACAGCTGGGCCATTGGCTGGTTTGGCCTTTAAATGGGAATCAATGAAGAACGGTTTTCAAAGTTT
TAAAGTGAATATAGGAGCCAACAAATTTCTTCCATTACGCCAAGCGCAGGAACCACAACTTGGGTCTCACGATTCATCATCTCAACCCCTCGATGAGATA
TTCCAGAGACTGAAACGACCATCTGCAGACCATGGAAGTCTCAGTGATGATGATGATTGA
AA sequence
>Potri.005G072100.1 pacid=42802637 polypeptide=Potri.005G072100.1.p locus=Potri.005G072100 ID=Potri.005G072100.1.v4.1 annot-version=v4.1
MWVLYLIWLPLTLGMVILTARYFAGPEVPRYVFFTVGYTWFCSLSIIILVPADIYTTKFDLDREGISFFWSWSYWSTFLLTWGAVPLIQGFEDAGDFTVM
ERLKTSVRANLVFYLIVGAIGLFGFILLITMNKIRIGNVLAVAMACSNTFGLVTGAFLLGFGLSEIPKSLWRNSEWSVRQKVLSHKIAKMAVKLDDAHQD
LSNAIVVAQATSNQMSKRDPLRPYMDVIDNMLAQMFKQDPSFKPQGGRLGENDMDFDTDEKSMATLRRHLQGAREEYYRCRSEYMTYVMEALELEDTVKN
YERSSSTGWKYISSFRPARTGKLGASFDRMEFLWQCILRKQLEKVLAVILGTMSATILLAEATILIGGVDLSLFSILINSAGKQELPMQVLAFVPLMYMC
ICTYYSLFKIGMLMFYSLTPRQTSSVSLLMICSMVARYAPPISYNFLNLINLDPKQTIFEKRMGKIDNAVPFFGNDFNRIYPLIMVIYTLLVASNFFDRV
IGFFGSLNRFRFQTEADGTDGFDPSGLIILQKERSWLDQGLKVGELVVPLARNFNGVDVETGSNSTDRTAAGMKATSSLASDERKGSRARPLKESQRYNT
SKEAISNKYAAVRAQSRHANTRPVENIASAKVPLLDAGSSHSHNTTAGPLAGLAFKWESMKNGFQSFKVNIGANKFLPLRQAQEPQLGSHDSSSQPLDEI
FQRLKRPSADHGSLSDDDD

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G65290 LMBR1-like membrane protein (.... Potri.005G072100
[exp]
0 1
AT4G21490 NDB3 NAD(P)H dehydrogenase B3 (.1) Potri.011G042500
[exp]
1.00 0.7976
AT5G40990 GLIP1 GDSL lipase 1 (.1) Potri.017G137000
[exp]
5.19 0.7845
AT1G55200 Protein kinase protein with ad... Potri.002G130300
[exp]
5.47 0.7478
AT3G12590 unknown protein Potri.010G207900
[exp]
7.74 0.7641
AT4G34440 AtPERK5 proline-rich extensin-like rec... Potri.004G153600
[exp]
8.00 0.7319
AT3G61670 Protein of unknown function (D... Potri.014G095700
[exp]
8.24 0.7922
Potri.019G023500
[exp]
14.38 0.7296
AT1G55750 BSD domain (BTF2-like transcri... Potri.005G061432
[exp]
15.65 0.7492
AT3G46920 Protein kinase superfamily pro... Potri.006G190200
[exp]
23.66 0.7399
AT1G78070 Transducin/WD40 repeat-like su... Potri.002G094100
[exp]
26.53 0.7028

Potri.005G072100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.