Plant FIBer expression Database

Potri.005G072200 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G40050 753 / 0 Protein of unknown function (DUF3550/UPF0682) (.1)
AT3G03570 498 / 2e-170 Protein of unknown function (DUF3550/UPF0682) (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.007G096800
[exp]
1043 / 0 AT4G40050 750 / 0.0 Protein of unknown function (DUF3550/UPF0682) (.1)
Potri.013G073200
[exp]
555 / 0 AT3G03570 794 / 0.0 Protein of unknown function (DUF3550/UPF0682) (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10023156
[exp]
827 / 0 AT4G40050 752 / 0.0 Protein of unknown function (DUF3550/UPF0682) (.1)
Lus10012756
[exp]
675 / 0 AT4G40050 620 / 0.0 Protein of unknown function (DUF3550/UPF0682) (.1)
Lus10020328
[exp]
511 / 4e-175 AT3G03570 771 / 0.0 Protein of unknown function (DUF3550/UPF0682) (.1)
Lus10005664
[exp]
505 / 8e-173 AT3G03570 769 / 0.0 Protein of unknown function (DUF3550/UPF0682) (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF12070 SCAI Protein SCAI
Representative CDS sequence
>Potri.005G072200.1 pacid=42805105 polypeptide=Potri.005G072200.1.p locus=Potri.005G072200 ID=Potri.005G072200.1.v4.1 annot-version=v4.1
ATGGCGAAGAAAGAAAACGACGACGTCTCAAAAACCTTCCACTCCTTGGTAGAAAGCGCAGACCGGAAGTTCGCTCGAGTCCGCGACCTGCCATTGTACG
GACGCTCCCCGCAGAATCACTACTTTCAGAAAGTGTTCAAGGCGTACATGAGGTTATGGAAGTACCAGCAGGACAACCGGTCAAAGCTAGTTGACTCCGG
TTTGAACCGGTGGGAAATCGGAGAGATCGCGAGTCGGATCGGGCAGTTGTATTATAATCAGTACATGAGGAGTAATGAAGCCAGGTTTTTAGTTGAAGCG
TACGTGTTTTACGAAGCGATTTTGGAGAGGAAGTATTTTGATGCCGGCGGAAGTGGTAAAGCGAAGGTTGATGTCGGTGTTAGGTTTAAGGAGTTGAGAT
TTTATGCTCGGTTCTTGCTTGTTGCTTTGATTTTGAGCAAGATGGATATGGTGAGATTGCTTGCTGAGAGGTTTAAAGCTCTTGTTGATGACTGCAAGAC
GAATTTTCGAGAAACAAACTTCAAAGAATGGAAGCTAGTGGTGCAAGAAATTTTCCGCTTTATGGAAGTTGATAGTGCCTTCACTAATGTCAGGCCTTTG
CGGTACTGTGCTCTATTTGATTCTCATGCAGCTTCTCGTCCTTATTTGGCTCGTTTCCATGCGAGGAAGATTGTAAAATTCAGAGATGCTCTCTTGACAA
GCTATCATAAAAATGAGGTTAAATTTGCGGAACTTACTTTGGACACTTACAGGATGATGCAATGTTTAGAATGGGAACCTAGTGAATCTTTCTACCAAAA
GCGTCCAGTTGAATCAGTTTACAAAAAGCATCCAGTTGAATTGAGTGAAAATGGCACTCTAATTGATCATTCTGGAGCTTCTGGATTGATAAATATAAAC
TTGGCTGCAGATTTGACCGATCCATCTTTACCATCAAATCCAAGGAAAGCTGTTCTTTATCGTCCTTCAGTGACATATTTGCTTGCGGTTATGGCAACAA
TTTGTGAAGAGCTCCCTCCAGAGAGCATCGCGCTCATATATTTATCAGCCTCAGGGAAGGCTGCTCGAAGTAATGTTTTTCAAGTAGAAAGCTCTGGAGA
ATCAAAGAAATCTTCCAAAGACAGAGTTGTCTCTGGAGCATTCAGTGAACAGAAAATCCATGCACTTGAATCCCATTGTAACGGGAAGAGAGAGTCAAGT
GACTACCATGACAACTGTCTCTGGTTAGGTCCTCGGGGAAATGGTGGGTCAAATGCCCTTTACCCTGGCGATATAATTCCTTTCACTCGAAGACCCCTTT
TCTTGATTATTGATAGTGACAACAGCCATGCATTCAAGGTCCTGCATGGTGCAGAAAGGGGAGAGCCAGCTGCTTTGCTTCTTTCACCTTTGAGGCCAGC
ATTCAAGAATCCATCTGCTGTTGATACAACACATAATGGAAGTCAATTTACCTTTTTCCTGACTGCTCCTCTGCAGGCATTCTGCCAGATGGTTGGCATC
ACTTCTGATTCTGATATGGATTCTTATAATGATGCTGAGGAGATACTTTCCCTTGCATTCTCTGAGTGGGAGGTTATTCTCTGTACATCAAAAGGCCTGG
ATCTGGTTTGGGCACAAGTTTTATCTGATCCATTTCTACGGAGGCTTATTCTTAGATTCATATTCTGCAGATCCGTGCTCTCGGTCTTCTGCCCTCCTGA
AGATGATGAGCAATATCTGCCCGTTTGCCTACCCCATCTTCCCAGTTCTGTCTCTGCGAGATCTGAAGTTGTGCAGTCAGCTATAATCCAGCTCGCAAAT
CATCTTAAGGTTGCAGATTGTTTTCAATTTGATGACAAGGAAGCAAGATAA
AA sequence
>Potri.005G072200.1 pacid=42805105 polypeptide=Potri.005G072200.1.p locus=Potri.005G072200 ID=Potri.005G072200.1.v4.1 annot-version=v4.1
MAKKENDDVSKTFHSLVESADRKFARVRDLPLYGRSPQNHYFQKVFKAYMRLWKYQQDNRSKLVDSGLNRWEIGEIASRIGQLYYNQYMRSNEARFLVEA
YVFYEAILERKYFDAGGSGKAKVDVGVRFKELRFYARFLLVALILSKMDMVRLLAERFKALVDDCKTNFRETNFKEWKLVVQEIFRFMEVDSAFTNVRPL
RYCALFDSHAASRPYLARFHARKIVKFRDALLTSYHKNEVKFAELTLDTYRMMQCLEWEPSESFYQKRPVESVYKKHPVELSENGTLIDHSGASGLININ
LAADLTDPSLPSNPRKAVLYRPSVTYLLAVMATICEELPPESIALIYLSASGKAARSNVFQVESSGESKKSSKDRVVSGAFSEQKIHALESHCNGKRESS
DYHDNCLWLGPRGNGGSNALYPGDIIPFTRRPLFLIIDSDNSHAFKVLHGAERGEPAALLLSPLRPAFKNPSAVDTTHNGSQFTFFLTAPLQAFCQMVGI
TSDSDMDSYNDAEEILSLAFSEWEVILCTSKGLDLVWAQVLSDPFLRRLILRFIFCRSVLSVFCPPEDDEQYLPVCLPHLPSSVSARSEVVQSAIIQLAN
HLKVADCFQFDDKEAR

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT4G40050 Protein of unknown function (D... Potri.005G072200
[exp]
0 1
AT4G34260 AXY8, FUC95A ALTERED XYLOGLUCAN 8, 1,2-alph... Potri.009G093500
[exp]
17.88 0.7109
AT5G06750 Protein phosphatase 2C family ... Potri.006G192600
[exp]
21.07 0.7092
AT4G32300 SD2-5 S-domain-2 5 (.1) Potri.018G027300
[exp]
24.55 0.7303
AT2G33860 ARF ARF3, ETT ETTIN, AUXIN RESPONSE TRANSCRI... Potri.011G059300
[exp]
24.67 0.7166
AT1G49540 ELP2, AtELP2 Elongator subunit 2, elongator... Potri.010G119600
[exp]
32.44 0.7119
AT5G04020 calmodulin binding (.1) Potri.016G041100
[exp]
35.72 0.6726
AT1G05710 bHLH bHLH153 basic helix-loop-helix (bHLH) ... Potri.019G112000
[exp]
42.19 0.7019
AT3G19770 ATVPS9A ARABIDOPSIS THALIANA VACUOLAR ... Potri.019G066200
[exp]
44.83 0.6265
AT1G27340 Galactose oxidase/kelch repeat... Potri.001G057100
[exp]
50.83 0.6362
AT2G38185 RING/U-box superfamily protein... Potri.006G100400
[exp]
55.74 0.7016

Potri.005G072200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.