Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G40020 220 / 1e-63 Myosin heavy chain-related protein (.1) AT1G65010 85 / 1e-16 Plant protein of unknown function (DUF827) (.1) AT5G16730 76 / 4e-14 Plant protein of unknown function (DUF827) (.1) AT3G02930 69 / 5e-12 Plant protein of unknown function (DUF827) (.1), Plant protein of unknown function (DUF827) (.2) AT4G27595 60 / 4e-09 Plant protein of unknown function (DUF827) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G096600 [exp] 761 / 0 AT4G40020 205 / 6e-58 Myosin heavy chain-related protein (.1) Potri.013G079000 [exp] 108 / 2e-24 AT5G16730 619 / 0.0 Plant protein of unknown function (DUF827) (.1) Potri.019G047600 [exp] 102 / 2e-22 AT5G16730 608 / 0.0 Plant protein of unknown function (DUF827) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000283 [exp] 237 / 3e-71 AT4G40020 190 / 6e-54 Myosin heavy chain-related protein (.1) Lus10020373 [exp] 110 / 6e-25 AT5G16730 610 / 0.0 Plant protein of unknown function (DUF827) (.1) Lus10009550 [exp] 107 / 9e-24 AT5G16730 571 / 0.0 Plant protein of unknown function (DUF827) (.1) Lus10000267 [exp] 86 / 2e-19 ND / Lus10022051 [exp] 58 / 2e-10 ND /
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.005G072400.2 pacid=42805011 polypeptide=Potri.005G072400.2.p locus=Potri.005G072400 ID=Potri.005G072400.2.v4.1 annot-version=v4.1 ATGCAACAAGATAAGGGGCAAGTTGAAGGGGAGCTGAGGAATTTAAAGCAGAGGCTGGATGTAGCAGAAAGGGAAAGACATAGAGCACGTGATGAGCTTA AAGAGATGAAGAAGGTGGCCGATGAGTCAAATTCCAGGTTAAAAGAAGCAATGTCTAATGGGAAGGTTGCTGATATATTTGTGGAACTCAATTCAGTAGT GGAATCATTGTCAAAATCAAATCAAGAGTTGAAGATCAAAGAAATGGCTATCACATCCTTGAAAGCTGAAGTTGGAAAGCTACGAGAGGCGGATAACTCT TTGGAAAAACTGAACAAAGAGTTAAGTAATGTTAAATCAACCGAGGCACGTACATTGGATTTATTATCCCATAGCAAGAAAAGAATTCAAGAACTTGAGG CTGAGGTACAGAAAGGGAACGAAGCAGAAACGAAGTTGCTAGATTCATTTGCCGCCCAAACGAAGCAGCTTGAGCAGACCAAGATACTGCTTGAAGAATC GAAGCTTGAGATTACTTCCCTTCGCAAGCAGGTAGAGGAGTTGGAGAAACATGATGGAGATAAAGTTTCATTGCAAAAAGAATTAGAGAGTCTCAAGTCT GAACTTCACCTGGAAAGACAGAACCGGACTCATGCTCAAGAGGGCGAAAAACATTCGGCATCGAAGACCAAGAGTCTACTCGAGGAGATGGAATTGCTTA AACGTGAACTGAAGCTAGCAAATGAAGCAGAAGAGAACAGCAAGAAGGCAATGGATGGCTTGGCAATGGCGCTAACAGAAGTTGCAACAGAATCCACTCA AACAAGGGAGAAGCTCAAGTTAACCCAGGAAGAGCTGGAGCGCTTCAAAAAGGAGGCAGAAATCTTACAGGAGAACATAAATAGCTTTGAGGACAAGCAT AGAACTCTTTTGAATGAAGAAAGGAAAGAAGCGGATCGATATAAAAAAACAGCAGAGAGGTTGCAAATAGAAGCTGAAGAGTCGCTTCTGGCATGGAATG CGAAAGAGACAGGCTTTGTCGATTGTATCAAAAGAGCTGAAGAGGAAAAGTCATACGCATGTGAAGAGAACAATAAACTTCTTGAATTGCTAAGAACAGC CGAGAACATGAACAAGATAGCTAAACAAGAGAATCAGAAGGTGCGCGATATACTTAAACAGGCCCTGAATGAAGCTAATGTTGCAAAAGAAGCTGCCGGG ATTGCCAGGGATGAAAATTCCCAACTCAAAGACGTCTTAGCTGAAAAAGACAATGCTTTGGTTTTCATTACTCAAGAGAACGAAAACCTTAGGATCAATG AAGCTGCAACTCTCGAGCAAATTAAAGAGTTGAAGCAGTTTCTCTCTGAAGCATCGGAAAGGGAGCTTAAAGTAGAAGATAAGGAAAACCAACTCAAGGA AAAGCCACAGAATGCAGAGGAGAAACAGGACAAAGACGGCAAGAAACTGGGCCGTACATGCAGTTTCAGTTTTAAAGAGCTAATAATTCCAAACAAACAC AGGGATGTAGATGAGAACAACAAAACTACAGATAAACAAAACAACAATGATGAGGATGAGGACTCTGAAAATCCTGATCTACTTAGGGGATCAATATTTG ATAAGCAAGCAGAATCACCAACCGCAGCAGTGCCTCGCAAGAAAAAATTCACAGATGTTGGAAAAGAAACAAAACCGGGTGATTATGACCATATAGACGG GGCTCATACCAATGATCCAGAGAGTGAAAGAAACTCTACGAGAAAAAGAGCATATATACGAAGATTTGGTGATATTCTACTGAGGAGAGGAGGATCACAC AGAAGGGGACAATCAGTTGGTGGTGAATAA
AA sequence Show only first row Show all	>Potri.005G072400.2 pacid=42805011 polypeptide=Potri.005G072400.2.p locus=Potri.005G072400 ID=Potri.005G072400.2.v4.1 annot-version=v4.1 MQQDKGQVEGELRNLKQRLDVAERERHRARDELKEMKKVADESNSRLKEAMSNGKVADIFVELNSVVESLSKSNQELKIKEMAITSLKAEVGKLREADNS LEKLNKELSNVKSTEARTLDLLSHSKKRIQELEAEVQKGNEAETKLLDSFAAQTKQLEQTKILLEESKLEITSLRKQVEELEKHDGDKVSLQKELESLKS ELHLERQNRTHAQEGEKHSASKTKSLLEEMELLKRELKLANEAEENSKKAMDGLAMALTEVATESTQTREKLKLTQEELERFKKEAEILQENINSFEDKH RTLLNEERKEADRYKKTAERLQIEAEESLLAWNAKETGFVDCIKRAEEEKSYACEENNKLLELLRTAENMNKIAKQENQKVRDILKQALNEANVAKEAAG IARDENSQLKDVLAEKDNALVFITQENENLRINEAATLEQIKELKQFLSEASERELKVEDKENQLKEKPQNAEEKQDKDGKKLGRTCSFSFKELIIPNKH RDVDENNKTTDKQNNNDEDEDSENPDLLRGSIFDKQAESPTAAVPRKKKFTDVGKETKPGDYDHIDGAHTNDPESERNSTRKRAYIRRFGDILLRRGGSH RRGQSVGGE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G40020			Myosin heavy chain-related pro...		Potri.005G072400 [exp]	0	1
AT1G29280	WRKY	ATWRKY65, WRKY6...	WRKY DNA-binding protein 65 (....		Potri.004G060900 [exp]	6.70	0.8474
AT4G22030			F-box family protein with a do...		Potri.011G006900 [exp]	7.34	0.8079
AT4G19460			UDP-Glycosyltransferase superf...		Potri.001G128300 [exp]	8.66	0.8222
AT1G22340		ATUGT85A7	UDP-glucosyl transferase 85A7 ...		Potri.016G022500 [exp]	10.77	0.7250
AT5G10260		AtRABH1e	RAB GTPase homolog H1E (.1)		Potri.005G075300 [exp]	21.97	0.8112
AT5G10660			calmodulin-binding protein-rel...		Potri.018G005500 [exp]	26.83	0.8188
AT4G31550	WRKY	ATWRKY11, WRKY1...	WRKY DNA-binding protein 11 (....		Potri.018G008500 [exp]	34.05	0.8151	Pt-WRKY11.1
AT3G62150		ABCB21, PGP21	ATP-binding cassette B21, P-gl...		Potri.002G187400 [exp]	35.72	0.8059
AT3G14280			unknown protein		Potri.003G072400 [exp]	37.46	0.8052
AT1G61140		EDA16	embryo sac development arrest ...		Potri.011G046400 [exp]	38.23	0.7920

Compare expression of checked genes

Potri.005G072400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.