Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G65280 586 / 0 GCL1 GCR2-like 1 (.1) AT1G52920 360 / 5e-122 GPCR, GCR2 G-PROTEIN COUPLED RECEPTOR 2, G protein coupled receptor (.1) AT2G20770 336 / 1e-112 GCL2 GCR2-like 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G096500 [exp] 769 / 0 AT5G65280 553 / 0.0 GCR2-like 1 (.1) Potri.001G403200 [exp] 373 / 6e-127 AT1G52920 601 / 0.0 G-PROTEIN COUPLED RECEPTOR 2, G protein coupled receptor (.1) Potri.013G134700 [exp] 337 / 4e-113 AT2G20770 605 / 0.0 GCR2-like 2 (.1) Potri.011G122300 [exp] 113 / 2e-29 AT1G52920 171 / 7e-52 G-PROTEIN COUPLED RECEPTOR 2, G protein coupled receptor (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025736 [exp] 585 / 0 AT5G65280 545 / 0.0 GCR2-like 1 (.1) Lus10035926 [exp] 579 / 0 AT5G65280 547 / 0.0 GCR2-like 1 (.1) Lus10020719 [exp] 366 / 2e-124 AT1G52920 578 / 0.0 G-PROTEIN COUPLED RECEPTOR 2, G protein coupled receptor (.1) Lus10033701 [exp] 344 / 2e-115 AT2G20770 587 / 0.0 GCR2-like 2 (.1) Lus10031638 [exp] 144 / 1e-38 AT2G20770 238 / 3e-76 GCR2-like 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0059 [poplar] [flax] 6_Hairpin PF05147 [poplar] [flax] LANC_like Lanthionine synthetase C-like protein
Representative CDS sequence Show only first row Show all	>Potri.005G072500.1 pacid=42803815 polypeptide=Potri.005G072500.1.p locus=Potri.005G072500 ID=Potri.005G072500.1.v4.1 annot-version=v4.1 ATGTCATATCTGGTGGGGGTAGCTTCTCAAGAGAACCACGAGGAGAACAACAACGAACGGCTAGATTTGACTCACCGCATAGATCCGACGTCCACAGATA TGCTACTCCCTCATGAAACTCTTCTCAGAGCTGCCATTTCTCTCAAGAACCAGGTAGTTGAAGTGACGTGGGAAAGAGATGGTAAAACAGGTACGGGTAT TGACCCGACAGTGTATACGGGTTTGCTCGGGACAGCTTTCACCTGCTTGCGGTCGTACGAAGTTACCGGTAACGAGCAGGACTTGCTGTTGTGCTCCGAG ATTGTTGACACATGTTCCGTTTCCGCACGGACCTCCTCTAGGCACATCACCTTCTTATGTGGAAGAGGAGGCTTATATGCACTAGGAGCCGTGGCTGCTA GCTACAAGGGGGACCGTAGAAGACGTGACTTCTTTGTGAATCTTTTCCTTGAGGTTGCACAAGAGAGAGCCCTCCCCGTTGGACCTGAGGAAGGTGGTTT TGGGATGTCGTATGAGCTTATGTATGGGAGAGCTGGGTTTTTATGGGCTGCTTTGTTCATCAACAAGCATCTTGGCGAAGGGACATTGCCTTGTGATCTT CTTATGCCTGTTGTTGATGCTGTTTTAGCTGGGGGAAGGGCAGGGGCATCTGATAATGCTGCTTGCCCACTGATGTACAGATGGCATGGGACAAGATACT GGGGTGCGCCCAATGGCCTTGCTGGAATCTTGCAAGTGCTACTTCACTTTCCTCTCTCCATTGAGGATGTCGAGGATGTTAAGGCAACTTTAAGGTACAT GATGAGCAACCGGTTCCCTCATAGTGGAAATTACCCTTCAAGCGAAGGAAACCCGAGGGACAAATTGGTGCAGTGGTCTCATGGTGCAACTGGCATGGCC ATCACCCTCTGCAAGGCATCTGAGATGTTTCCAAATGATAGAGAGTTCCGAAATGCTGCCATAGAAGCAGGGGAAGTTGTTTGGAAGAGTGGGTTAGTGA AGAAGGTAGGCCTTGCCGATGGTGCGGCAGGAAACGCTTATGCCTTCCTTTCCCTTTATCGTCTTACTGGAGAGAGCATATATGAGGAGAGAGCAAATGC GTTTGCAAGCTTCCTGTATCATAATGCTAGTGAACTTGTGACAATAGGGGATGCTCGTGGAGCTAATCATGCCTATTCTCTTTTCCAAGGACTAGCCGGA ACAGCTTGCCTTTGGTTTGATCTTCTCAAACCTGAGAGTTCCAGGTTCCCAGGTTATGAACTTTAA
AA sequence Show only first row Show all	>Potri.005G072500.1 pacid=42803815 polypeptide=Potri.005G072500.1.p locus=Potri.005G072500 ID=Potri.005G072500.1.v4.1 annot-version=v4.1 MSYLVGVASQENHEENNNERLDLTHRIDPTSTDMLLPHETLLRAAISLKNQVVEVTWERDGKTGTGIDPTVYTGLLGTAFTCLRSYEVTGNEQDLLLCSE IVDTCSVSARTSSRHITFLCGRGGLYALGAVAASYKGDRRRRDFFVNLFLEVAQERALPVGPEEGGFGMSYELMYGRAGFLWAALFINKHLGEGTLPCDL LMPVVDAVLAGGRAGASDNAACPLMYRWHGTRYWGAPNGLAGILQVLLHFPLSIEDVEDVKATLRYMMSNRFPHSGNYPSSEGNPRDKLVQWSHGATGMA ITLCKASEMFPNDREFRNAAIEAGEVVWKSGLVKKVGLADGAAGNAYAFLSLYRLTGESIYEERANAFASFLYHNASELVTIGDARGANHAYSLFQGLAG TACLWFDLLKPESSRFPGYEL

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G65280		GCL1	GCR2-like 1 (.1)		Potri.005G072500 [exp]	0	1
AT1G19310			RING/U-box superfamily protein...		Potri.002G133000 [exp]	3.87	0.8156
AT3G51610		NPU	NO PRIMEXINE AND PLASMA MEMBRA...		Potri.016G134700 [exp]	4.00	0.8136
AT1G15880		ATGOS11, GOS11	golgi snare 11 (.1)		Potri.003G180800 [exp]	6.00	0.7745	GOS11.2
AT4G08455			BTB/POZ domain-containing prot...		Potri.005G183600 [exp]	6.92	0.7834
AT3G17210		ATHS1	A. THALIANA HEAT STABLE PROTEI...		Potri.010G037500 [exp]	7.54	0.7483
AT3G05010			Protein of unknown function, t...		Potri.005G044700 [exp]	9.16	0.8054
AT1G36380			unknown protein		Potri.005G171000 [exp]	19.49	0.8035
AT5G58575			unknown protein		Potri.001G279700 [exp]	20.07	0.7334
AT1G10630		ATARFA1F	ADP-ribosylation factor A1F (....		Potri.005G007400 [exp]	24.97	0.8085	Pt-ARF1.7
AT2G02180		TOM3	tobamovirus multiplication pro...		Potri.008G144400 [exp]	31.08	0.7937	Pt-TOM3.1

Compare expression of checked genes

Potri.005G072500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.