Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G22420 521 / 0 Peroxidase superfamily protein (.1) AT4G36430 293 / 3e-98 Peroxidase superfamily protein (.1) AT5G19890 293 / 5e-98 Peroxidase superfamily protein (.1) AT2G18150 289 / 2e-96 Peroxidase superfamily protein (.1) AT4G16270 286 / 4e-95 Peroxidase superfamily protein (.1) AT2G18140 280 / 4e-93 Peroxidase superfamily protein (.1) AT5G66390 277 / 6e-92 Peroxidase superfamily protein (.1) AT3G50990 276 / 1e-91 Peroxidase superfamily protein (.1) AT5G06720 275 / 4e-91 ATPA2 peroxidase 2 (.1) AT1G44970 272 / 7e-90 Peroxidase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G096200 [exp] 610 / 0 AT2G22420 521 / 0.0 Peroxidase superfamily protein (.1) Potri.001G011200 [exp] 291 / 4e-97 AT3G49120 381 / 2e-132 PEROXIDASE 34, ARABIDOPSIS THALIANA PEROXIDASE CB, peroxidase CB (.1) Potri.001G011000 [exp] 290 / 1e-96 AT3G49120 407 / 1e-142 PEROXIDASE 34, ARABIDOPSIS THALIANA PEROXIDASE CB, peroxidase CB (.1) Potri.005G118700 [exp] 288 / 3e-96 AT5G66390 504 / 0.0 Peroxidase superfamily protein (.1) Potri.001G011300 [exp] 285 / 5e-95 AT3G49120 410 / 8e-144 PEROXIDASE 34, ARABIDOPSIS THALIANA PEROXIDASE CB, peroxidase CB (.1) Potri.001G013000 [exp] 284 / 2e-94 AT3G49120 407 / 2e-142 PEROXIDASE 34, ARABIDOPSIS THALIANA PEROXIDASE CB, peroxidase CB (.1) Potri.013G083600 [exp] 283 / 2e-94 AT5G05340 483 / 2e-173 Peroxidase superfamily protein (.1) Potri.001G012901 [exp] 283 / 3e-94 AT5G06730 387 / 1e-134 Peroxidase superfamily protein (.1) Potri.002G031200 [exp] 283 / 5e-94 AT1G44970 492 / 6e-176 Peroxidase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035925 [exp] 404 / 5e-142 AT2G22420 418 / 1e-147 Peroxidase superfamily protein (.1) Lus10041784 [exp] 281 / 3e-93 AT5G66390 519 / 0.0 Peroxidase superfamily protein (.1) Lus10008168 [exp] 281 / 4e-93 AT5G06720 393 / 5e-137 peroxidase 2 (.1) Lus10027989 [exp] 280 / 1e-92 AT5G06720 400 / 1e-139 peroxidase 2 (.1) Lus10010634 [exp] 278 / 6e-92 AT1G44970 449 / 5e-159 Peroxidase superfamily protein (.1) Lus10008173 [exp] 276 / 6e-91 AT5G06730 407 / 3e-142 Peroxidase superfamily protein (.1) Lus10004163 [exp] 275 / 6e-91 AT5G06720 446 / 1e-158 peroxidase 2 (.1) Lus10027984 [exp] 273 / 5e-90 AT5G06730 402 / 2e-140 Peroxidase superfamily protein (.1) Lus10008174 [exp] 271 / 4e-89 AT5G06730 382 / 2e-132 Peroxidase superfamily protein (.1) Lus10026748 [exp] 270 / 4e-89 AT5G19890 402 / 6e-141 Peroxidase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0617 [poplar] [flax] Peroxidase PF00141 [poplar] [flax] peroxidase Peroxidase
Representative CDS sequence Show only first row Show all	>Potri.005G072800.1 pacid=42804308 polypeptide=Potri.005G072800.1.p locus=Potri.005G072800 ID=Potri.005G072800.1.v4.1 annot-version=v4.1 ATGTCTCCTCCCCTCCCAGCCTTTCTCTTGCTCATATCCATCGCCTTTACCTCTGCCTCTGTTGTGCCACTCCAGCCTGGATTTTACGCCGAGACGTGCC CGGAAGCTGAATTCATAGTCAAGGATGTGATGAGGAGGAACATGATAAGAGAACCAAGAAGTGCTGCCTCAGTCATGCGTTTTCAATTCCATGATTGTTT TGTTAATGGTTGTGATGCTTCTATGCTGCTCGATGACACACCAAACATGCTAGGAGAGAAGCTCTCTCTGTCCAACATAGATTCTTTAAGGTCTTATGAA GTTGTTGATGAAATTAAGGAAGAGTTGGAGAGGGTTTGTCCTGGGACGGTTTCTTGTGCAGATATAATCATCATGGCCTCTAGAGATGCAGTTGTCCTGA GCGGAGGACCTGATTGGGAAGTGAAGTTAGGGAGGGAAGACAGCTTAACAGCCAGCCAAGAGGATGCCAACAATATCATGCCTAGTCCAAGAGCTAATGC AAGCCTTCTCATGGACCTCTTTGAAGGATACAATCTCTCTGTCAAGGATATGGTAGCCCTTTCAGGGTCACATTCTATAGGTCAGGCTCGGTGCTTCTCT ATAGTCTTCAGGCTCTATAATCAATCAGGCTCTGGCAAGCCTGACCCAACAATTGAGCCAAGGTATAAAGAGAAGCTGAACAGGCTTTGCCCACTCGGTG GAGATGAAAATGTGACAGGAGACCTCGATGCAACACCAACTATGTTTGATAACAGATATTTCAAGGACTTGGCTGCTGGGAGAGGGTTTCTTAATTCTGA CCAAACACTTTACACATTTCCTGAAACAAGGAAGTATGTAGCCCTTTTCAGCAAAGACCAGCGGACATTTTTTAACGCCTTCGTTGAGGGCATGATAAAG ATGGGTGATCTGCAGTCTGGGCGGCCTGGAGAGATTAGAAGCAATTGCAGGATGGTCAACAGCCGGCCTGTTAATGCACTGTTGGAGTCTTGA
AA sequence Show only first row Show all	>Potri.005G072800.1 pacid=42804308 polypeptide=Potri.005G072800.1.p locus=Potri.005G072800 ID=Potri.005G072800.1.v4.1 annot-version=v4.1 MSPPLPAFLLLISIAFTSASVVPLQPGFYAETCPEAEFIVKDVMRRNMIREPRSAASVMRFQFHDCFVNGCDASMLLDDTPNMLGEKLSLSNIDSLRSYE VVDEIKEELERVCPGTVSCADIIIMASRDAVVLSGGPDWEVKLGREDSLTASQEDANNIMPSPRANASLLMDLFEGYNLSVKDMVALSGSHSIGQARCFS IVFRLYNQSGSGKPDPTIEPRYKEKLNRLCPLGGDENVTGDLDATPTMFDNRYFKDLAAGRGFLNSDQTLYTFPETRKYVALFSKDQRTFFNAFVEGMIK MGDLQSGRPGEIRSNCRMVNSRPVNALLES

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G22420			Peroxidase superfamily protein...		Potri.005G072800 [exp]	0	1
AT3G51660			Tautomerase/MIF superfamily pr...		Potri.006G104800 [exp]	42.95	0.6578
AT3G06330			RING/U-box superfamily protein...		Potri.010G014950 [exp]	56.08	0.6291
AT2G18570			UDP-Glycosyltransferase superf...		Potri.007G030500 [exp]	60.99	0.6430	Pt-CGT5.1
AT3G56850	bZIP	DPBF3, AREB3	ABA-responsive element binding...		Potri.010G248100 [exp]	105.46	0.6048
AT1G49390			2-oxoglutarate (2OG) and Fe(II...		Potri.003G030400 [exp]	111.62	0.6042
AT3G06330			RING/U-box superfamily protein...		Potri.010G014800 [exp]	174.92	0.5980
AT1G78600	CO	BBX22, DBB3, ST...	SALT TOLERANCE HOMOLOG 3, DOUB...		Potri.001G384000 [exp]	226.67	0.5826

Compare expression of checked genes

Potri.005G072800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.