Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-ATGB3.3
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G65270 403 / 8e-145 AtRABA4a RAB GTPase homolog A4A (.1) AT4G39990 363 / 4e-129 ATGB3, AtRABA4b, AtRab11G ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG A 4B, GTP-BINDING PROTEIN 3, RAB GTPase homolog A4B (.1) AT3G12160 342 / 6e-121 AtRABA4d ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG A4D, RAB GTPase homolog A4D (.1) AT5G47960 328 / 3e-115 SMG1, AtRABA4c SMALL MOLECULAR WEIGHT G-PROTEIN 1, RAB GTPase homolog A4C (.1) AT1G07410 268 / 1e-91 ATRAB-A2B, AtRABA2b ARABIDOPSIS RAB GTPASE HOMOLOG A2B, RAB GTPase homolog A2B (.1) AT1G09630 267 / 3e-91 ATRAB-A2A, ATRAB11C, ATRABA2A ARABIDOPSIS RAB GTPASE A2A, RAB GTPase 11C (.1) AT1G16920 263 / 6e-90 ATRABA4B, RAB11, ATRABA1B RAB GTPase homolog A1B (.1) AT4G18800 263 / 1e-89 AthSGBP, AtRab11B, AtRABA1d RAB GTPase homolog A1D (.1) AT5G47520 263 / 1e-89 AtRABA5a RAB GTPase homolog A5A (.1) AT3G46830 261 / 6e-89 ATRAB-A2C, AtRab11A, AtRABA2c ARABIDOPSIS RAB GTPASE HOMOLOG A2C, RAB GTPase homolog A2C (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G096000 [exp] 445 / 1e-161 AT5G65270 404 / 2e-145 RAB GTPase homolog A4A (.1) Potri.001G270100 [exp] 337 / 9e-119 AT3G12160 379 / 2e-135 ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG A4D, RAB GTPase homolog A4D (.1) Potri.006G057700 [exp] 330 / 2e-116 AT3G12160 387 / 1e-138 ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG A4D, RAB GTPase homolog A4D (.1) Potri.016G050400 [exp] 325 / 3e-114 AT3G12160 387 / 1e-138 ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG A4D, RAB GTPase homolog A4D (.1) Potri.014G102200 [exp] 278 / 2e-95 AT1G01200 332 / 2e-116 ARABIDOPSIS RAB GTPASE HOMOLOG A3, RAB GTPase homolog A3 (.1) Potri.006G000300 [exp] 276 / 8e-95 AT1G07410 400 / 4e-144 ARABIDOPSIS RAB GTPASE HOMOLOG A2B, RAB GTPase homolog A2B (.1) Potri.002G175700 [exp] 275 / 3e-94 AT1G01200 333 / 4e-117 ARABIDOPSIS RAB GTPASE HOMOLOG A3, RAB GTPase homolog A3 (.1) Potri.003G004100 [exp] 274 / 4e-94 AT1G09630 382 / 6e-137 ARABIDOPSIS RAB GTPASE A2A, RAB GTPase 11C (.1) Potri.010G197200 [exp] 273 / 9e-94 AT1G07410 370 / 3e-132 ARABIDOPSIS RAB GTPASE HOMOLOG A2B, RAB GTPase homolog A2B (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023153 [exp] 397 / 2e-142 AT5G65270 396 / 3e-142 RAB GTPase homolog A4A (.1) Lus10000637 [exp] 397 / 2e-142 AT5G65270 395 / 8e-142 RAB GTPase homolog A4A (.1) Lus10025738 [exp] 393 / 5e-141 AT5G65270 404 / 4e-145 RAB GTPase homolog A4A (.1) Lus10035924 [exp] 393 / 5e-141 AT5G65270 404 / 3e-145 RAB GTPase homolog A4A (.1) Lus10012032 [exp] 319 / 8e-112 AT3G12160 379 / 1e-135 ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG A4D, RAB GTPase homolog A4D (.1) Lus10016284 [exp] 317 / 8e-111 AT3G12160 386 / 2e-138 ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG A4D, RAB GTPase homolog A4D (.1) Lus10023829 [exp] 312 / 9e-107 AT3G12160 377 / 5e-132 ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG A4D, RAB GTPase homolog A4D (.1) Lus10021023 [exp] 316 / 7e-106 AT3G12160 384 / 3e-132 ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG A4D, RAB GTPase homolog A4D (.1) Lus10002725 [exp] 302 / 6e-105 AT5G47960 334 / 1e-117 SMALL MOLECULAR WEIGHT G-PROTEIN 1, RAB GTPase homolog A4C (.1) Lus10014732 [exp] 300 / 7e-104 AT5G47960 332 / 6e-117 SMALL MOLECULAR WEIGHT G-PROTEIN 1, RAB GTPase homolog A4C (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00025 [poplar] [flax] Arf ADP-ribosylation factor family
Representative CDS sequence Show only first row Show all	>Potri.005G073000.2 pacid=42803925 polypeptide=Potri.005G073000.2.p locus=Potri.005G073000 ID=Potri.005G073000.2.v4.1 annot-version=v4.1 ATGGCTAGTGGGGGTGGATATGGAGATGCGAGCCAAAAGATAGACTATGTATTTAAGGTGGTGTTGATAGGGGACTCAGCAGTTGGGAAATCACAAATAC TTGCTCGATTTGCTAGAAACGAGTTTAGTCTTGACTCTAAAGCTACTATTGGTGTTGAGTTTCAAACTCGGACTTTAGTTATTGATCATAAGAGTGTCAA GGCCCAGATCTGGGATACTGCTGGTCAAGAACGGTACAGAGCAGTCACAAGTGCATACTACAGGGGTGCTGTTGGGGCAATGCTGGTGTATGACATAACC AAACGCCAGACATTTGATCACATACCACGCTGGCTGGAAGAACTGCGTAGCCATGCCGACAAGAACATAGTTATCATTCTGATTGGGAACAAAAGTGATC TTGAGGACCAGCGGGCCGTACCCACTGAGGATGTCAATGAATTTGCTCAGAAGGAAGGACTATTCTTCCTCGAGACCTCAGCATTGCAAGCAACTAATGT TGAGAGCGCCTTTATGACTCTGTTGACAGAGATCTTCAACATTGTAAACAAGAAGAACCTGATTGCTGGTGAAAATCAAAGCAACGGTAACCCGGCATCC TTGTCCGGCAAGAAGATCATCATTCCAGGCCCTGCACAAGAAATTCCATCTAAGAGCAAGTGTTGTAGATAA
AA sequence Show only first row Show all	>Potri.005G073000.2 pacid=42803925 polypeptide=Potri.005G073000.2.p locus=Potri.005G073000 ID=Potri.005G073000.2.v4.1 annot-version=v4.1 MASGGGYGDASQKIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLVIDHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDIT KRQTFDHIPRWLEELRSHADKNIVIILIGNKSDLEDQRAVPTEDVNEFAQKEGLFFLETSALQATNVESAFMTLLTEIFNIVNKKNLIAGENQSNGNPAS LSGKKIIIPGPAQEIPSKSKCCR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G65270		AtRABA4a	RAB GTPase homolog A4A (.1)		Potri.005G073000 [exp]	0	1	Pt-ATGB3.3
AT5G22130		PNT1	PEANUT 1, mannosyltransferase ...		Potri.001G031500 [exp]	4.35	0.8449	Pt-PNT1.1
AT1G80670		RAE1	RNA export factor 1, Transduci...		Potri.003G180000 [exp]	7.74	0.7874
AT3G56750			unknown protein		Potri.016G035600 [exp]	9.89	0.8424
AT1G19910		AVA-2PE, ATVHA-...	VACUOLAR-TYPE H+ ATPASE C2, AT...		Potri.002G027200 [exp]	16.15	0.7955	AVA.1
AT2G20930			SNARE-like superfamily protein...		Potri.009G136800 [exp]	17.02	0.7883
AT2G26680			unknown protein		Potri.014G017900 [exp]	23.68	0.7015
AT5G13050		5-FCL	5-formyltetrahydrofolate cyclo...		Potri.012G072800 [exp]	23.91	0.7620
AT1G71900			Protein of unknown function (D...		Potri.019G084600 [exp]	24.00	0.7762
AT4G27760		FEY3, FEY	FOREVER YOUNG, NAD(P)-binding ...		Potri.015G028900 [exp]	42.33	0.7460
AT5G09225			unknown protein		Potri.006G039100 [exp]	48.78	0.7578

Compare expression of checked genes

Potri.005G073000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.