Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G17840 661 / 0 AtABCG11, WBC11, DSO, ABCG11 ,COF1, ATWBC11 DESPERADO, CUTICULAR DEFECT AND ORGAN FUSION 1, ARABIDOPSIS THALIANA WHITE-BROWN COMPLEX HOMOLOG PROTEIN 11, ATP-binding cassette G11, white-brown complex homolog protein 11 (.1) AT3G21090 615 / 0 ABCG15 ATP-binding cassette G15, ABC-2 type transporter family protein (.1) AT1G51500 594 / 0 AtABCG12, WBC12, ABCG12, D3, CER5, ATWBC12 ECERIFERUM 5, ARABIDOPSIS THALIANA WHITE-BROWN COMPLEX 12, ATP-binding cassette G12, ABC-2 type transporter family protein (.1) AT1G51460 560 / 0 ABCG13 ATP-binding cassette G13, ABC-2 type transporter family protein (.1) AT2G28070 397 / 4e-128 ABCG3 ATP-binding cassette G3, ABC-2 type transporter family protein (.1) AT2G13610 282 / 3e-85 ABCG5 ATP-binding cassette G5, ABC-2 type transporter family protein (.1) AT4G25750 257 / 1e-76 ABCG4 ATP-binding cassette G4, ABC-2 type transporter family protein (.1) AT2G01320 260 / 3e-76 ABCG7 ATP-binding cassette G7, ABC-2 type transporter family protein (.1.2.3.4) AT5G19410 258 / 3e-76 ABCG23 ATP-binding cassette G23, ABC-2 type transporter family protein (.1) AT1G53270 256 / 4e-76 ABCG10 ATP-binding cassette G10, ABC-2 type transporter family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G073050 [exp] 1442 / 0 AT1G17840 659 / 0.0 DESPERADO, CUTICULAR DEFECT AND ORGAN FUSION 1, ARABIDOPSIS THALIANA WHITE-BROWN COMPLEX HOMOLOG PROTEIN 11, ATP-binding cassette G11, white-brown complex homolog protein 11 (.1) Potri.001G311300 [exp] 926 / 0 AT1G17840 617 / 0.0 DESPERADO, CUTICULAR DEFECT AND ORGAN FUSION 1, ARABIDOPSIS THALIANA WHITE-BROWN COMPLEX HOMOLOG PROTEIN 11, ATP-binding cassette G11, white-brown complex homolog protein 11 (.1) Potri.001G312300 [exp] 912 / 0 AT1G17840 624 / 0.0 DESPERADO, CUTICULAR DEFECT AND ORGAN FUSION 1, ARABIDOPSIS THALIANA WHITE-BROWN COMPLEX HOMOLOG PROTEIN 11, ATP-binding cassette G11, white-brown complex homolog protein 11 (.1) Potri.017G051300 [exp] 895 / 0 AT1G17840 611 / 0.0 DESPERADO, CUTICULAR DEFECT AND ORGAN FUSION 1, ARABIDOPSIS THALIANA WHITE-BROWN COMPLEX HOMOLOG PROTEIN 11, ATP-binding cassette G11, white-brown complex homolog protein 11 (.1) Potri.017G051000 [exp] 885 / 0 AT1G17840 596 / 0.0 DESPERADO, CUTICULAR DEFECT AND ORGAN FUSION 1, ARABIDOPSIS THALIANA WHITE-BROWN COMPLEX HOMOLOG PROTEIN 11, ATP-binding cassette G11, white-brown complex homolog protein 11 (.1) Potri.017G155300 [exp] 681 / 0 AT1G17840 1174 / 0.0 DESPERADO, CUTICULAR DEFECT AND ORGAN FUSION 1, ARABIDOPSIS THALIANA WHITE-BROWN COMPLEX HOMOLOG PROTEIN 11, ATP-binding cassette G11, white-brown complex homolog protein 11 (.1) Potri.018G152600 [exp] 673 / 0 AT1G17840 1152 / 0.0 DESPERADO, CUTICULAR DEFECT AND ORGAN FUSION 1, ARABIDOPSIS THALIANA WHITE-BROWN COMPLEX HOMOLOG PROTEIN 11, ATP-binding cassette G11, white-brown complex homolog protein 11 (.1) Potri.001G255800 [exp] 615 / 0 AT3G21090 1038 / 0.0 ATP-binding cassette G15, ABC-2 type transporter family protein (.1) Potri.009G051200 [exp] 612 / 0 AT3G21090 1008 / 0.0 ATP-binding cassette G15, ABC-2 type transporter family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023154 [exp] 943 / 0 AT1G17840 613 / 0.0 DESPERADO, CUTICULAR DEFECT AND ORGAN FUSION 1, ARABIDOPSIS THALIANA WHITE-BROWN COMPLEX HOMOLOG PROTEIN 11, ATP-binding cassette G11, white-brown complex homolog protein 11 (.1) Lus10040644 [exp] 615 / 0 AT1G17840 1120 / 0.0 DESPERADO, CUTICULAR DEFECT AND ORGAN FUSION 1, ARABIDOPSIS THALIANA WHITE-BROWN COMPLEX HOMOLOG PROTEIN 11, ATP-binding cassette G11, white-brown complex homolog protein 11 (.1) Lus10027354 [exp] 579 / 0 AT3G21090 868 / 0.0 ATP-binding cassette G15, ABC-2 type transporter family protein (.1) Lus10009961 [exp] 563 / 0 AT3G21090 971 / 0.0 ATP-binding cassette G15, ABC-2 type transporter family protein (.1) Lus10009959 [exp] 561 / 0 AT3G21090 860 / 0.0 ATP-binding cassette G15, ABC-2 type transporter family protein (.1) Lus10009960 [exp] 540 / 0 AT3G21090 855 / 0.0 ATP-binding cassette G15, ABC-2 type transporter family protein (.1) Lus10000339 [exp] 533 / 0 AT1G51460 837 / 0.0 ATP-binding cassette G13, ABC-2 type transporter family protein (.1) Lus10018268 [exp] 473 / 3e-160 AT1G17840 849 / 0.0 DESPERADO, CUTICULAR DEFECT AND ORGAN FUSION 1, ARABIDOPSIS THALIANA WHITE-BROWN COMPLEX HOMOLOG PROTEIN 11, ATP-binding cassette G11, white-brown complex homolog protein 11 (.1) Lus10031063 [exp] 447 / 4e-148 AT3G21090 659 / 0.0 ATP-binding cassette G15, ABC-2 type transporter family protein (.1) Lus10035445 [exp] 448 / 4e-145 AT3G21090 667 / 0.0 ATP-binding cassette G15, ABC-2 type transporter family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00005 [poplar] [flax] ABC_tran ABC transporter CL0181 [poplar] [flax] ABC-2 PF01061 [poplar] [flax] ABC2_membrane ABC-2 type transporter
Representative CDS sequence Show only first row Show all	>Potri.005G073100.2 pacid=42803941 polypeptide=Potri.005G073100.2.p locus=Potri.005G073100 ID=Potri.005G073100.2.v4.1 annot-version=v4.1 ATGGATTCTGCAGTTAATGTGCCTAGATGGACTCCAAGTCCAAGCCCCACTAGATCACTTCTAAAAGAGCCTGAAACAAAAGCTAACGTTGTTCCATCGA AAAGAGAAGCAGGTGTAGATGACTTGGAGTTGCAAAGCATAATCTCTGAGGAAGATGGCAAGCCTACAACGGTAGACAACACGTTCCCATTTAGCCCTGG CACCACAGCAGGTCCTGATCCACCTCCTTATTCAGGCACCTATGAAGCATCATCTATGATGACAGAGATGGAGCCACTCGGGACGTTACCAAAGGGAGGC AAGAACTATGATGGTGAAGGCTTGACATCAAAGGGAAACAGAAATGGCCTTCTCATGACATGGATTGATCTGTGGGTTACAGTGCCTGATGGGAAAAACG GGGGCCGACCAATCCTGCACGGTCTAACCGGTTATGCTCAGCCAGGGGAGGTTTTGGCTATTATGGGTCCTTCGGGAAGCGGCAAGACAACTCTTCTAGA TGCTCTGGCAGGAAGATTAAGTTCAAACACACAGCAAACTGGAGAGATCCTAATCAATGGTCGAAAGGAGACACTTGCATTTGGAACTTCGGCCTACGTT ACTCAAGATGATACTCTAATGACAACATTAACTGTGAGGGAAGCTGTCTACTACTCAGCACAGCTCCAACTTCCAGACTCCATGTCAACATCTGAGAAGA AGGAAAGAGCTGAGATAACAATAAGAGAGATGGGCTTACAAGGCTCTGCTGACACCAGAATAGGAGGGTGGAGCGTGAAGGGCATTAGCGGAGGACAGAA GAGGAGAGTTAGTATTTGCATCGAAATCTTGACCCAGCCCAAGCTGCTCTTCCTTGATGAGCCTACTAGTGGACTGGATAGTGCAGCATCTTACCATGTC ATGAACCATATCGTTAAGCTTGCTCGCCAAGAAGGAAGGACAATTGTTGCATCAATTCATCAGCCAAGTAGTGAGGTTTTTGAGCTCTTCCACAACCTCT GCCTTCTTTCTTCTGGAAGAACCGTCTATTTTGGTCCTGTTTCAATGGCAGAACAGTTCTTTTCTTCAAATGGCTTTCCATGCGCTCCTTTGAGAAACCC ATCAGATCACTACCTTAGAACCATAAACGCGGATTTTGATATGGACATTGAACAAGGGCATGGTGGCAGCACAGAGGAAGCCATCAATATTCTTGTCAAG TCCTACAAATCATCAGAGATTTTCCTGCAAGTTCGCCAGCGAGTAGCTTCCATATGCGAGCAGAAAGGAGGAATTCTAGAGAAGAAAGGAAGCCAGGCAA GCTTCATCACTCAGTGCCTTGTTCTTACAAGGAGATCTTTCGTCAACATGTACCGCGATCTAGGCTATTACTGGCTTCGCCTTGCAATCTACATAGCATT GTGCCTATGTGTAGGGACAATCTTCTATGATATTGGCTTAACTTTTGGGTCAATACAGGCTAGAGGCTCAATGCTCATGTTTGTTGCTGCATTCTTGACT TTCATGGCAATTGGTGGATTCCCCTCTTTCGTAGAGGACATGAAGATTTTCGGACGAGAAAGATTAAATGGGCACTATGGTGTTGGTGCATATGTTGTTG GAAACACATTGTCTTCCATTCCTTACCTGCTCATGATATCTTTAATCCCTGGAGCAATGGCCTATTACCTAGTTGGCCTTCAAAAGAGCTTGGAACACTT TGTCTGCTTCGCATTGATACTCTTCGTGTGCATGATGCTGGTTGAAAGCTTAATGATGATCGTTGCAAGTATCGTGCCAGATTTCTTGATGGGTATTATA ACAGGTGCAGGAATTCAAGGTGTTATGATGTTAAACGGAGGATTTTTTCGGTTGCCAGATGATCTTCCTAAGCCTTTCTGGAGATATCCGATGTACTACA TTGCATTCCACAAATATGCAAACCAAGGGTTCTACAAGAATGAATTCCAAGGATTGACATTCCCTAATAATCTAGCCGGAGGGCCACCTACCATTACTGG CGAAGAAATTCTGAAAAACACATGGCAAGTAGAGATGGGTTATTCTAAGTGGATTGATATCGCTATCCTCTTAGGAATGGTGATTCTTTACCGTCTCATG TTTTTGGGAATCATAAAACTTGTTGAAAAGGTTAAACCAATCATCAGAGCTGCTTTTGCTGGTGCTCCAAGACAATCAAAACATGTCTAG
AA sequence Show only first row Show all	>Potri.005G073100.2 pacid=42803941 polypeptide=Potri.005G073100.2.p locus=Potri.005G073100 ID=Potri.005G073100.2.v4.1 annot-version=v4.1 MDSAVNVPRWTPSPSPTRSLLKEPETKANVVPSKREAGVDDLELQSIISEEDGKPTTVDNTFPFSPGTTAGPDPPPYSGTYEASSMMTEMEPLGTLPKGG KNYDGEGLTSKGNRNGLLMTWIDLWVTVPDGKNGGRPILHGLTGYAQPGEVLAIMGPSGSGKTTLLDALAGRLSSNTQQTGEILINGRKETLAFGTSAYV TQDDTLMTTLTVREAVYYSAQLQLPDSMSTSEKKERAEITIREMGLQGSADTRIGGWSVKGISGGQKRRVSICIEILTQPKLLFLDEPTSGLDSAASYHV MNHIVKLARQEGRTIVASIHQPSSEVFELFHNLCLLSSGRTVYFGPVSMAEQFFSSNGFPCAPLRNPSDHYLRTINADFDMDIEQGHGGSTEEAINILVK SYKSSEIFLQVRQRVASICEQKGGILEKKGSQASFITQCLVLTRRSFVNMYRDLGYYWLRLAIYIALCLCVGTIFYDIGLTFGSIQARGSMLMFVAAFLT FMAIGGFPSFVEDMKIFGRERLNGHYGVGAYVVGNTLSSIPYLLMISLIPGAMAYYLVGLQKSLEHFVCFALILFVCMMLVESLMMIVASIVPDFLMGII TGAGIQGVMMLNGGFFRLPDDLPKPFWRYPMYYIAFHKYANQGFYKNEFQGLTFPNNLAGGPPTITGEEILKNTWQVEMGYSKWIDIAILLGMVILYRLM FLGIIKLVEKVKPIIRAAFAGAPRQSKHV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G17840		AtABCG11, WBC11...	DESPERADO, CUTICULAR DEFECT AN...		Potri.005G073100 [exp]	0	1
AT2G29120		ATGLR2.7	GLUTAMATE RECEPTOR 2.7, gluta...		Potri.018G012600 [exp]	2.44	0.9459
AT1G12990			beta-1,4-N-acetylglucosaminylt...		Potri.008G186000 [exp]	3.87	0.9042
AT2G29120		ATGLR2.7	GLUTAMATE RECEPTOR 2.7, gluta...		Potri.018G012100 [exp]	4.47	0.9328
AT2G29120		ATGLR2.7	GLUTAMATE RECEPTOR 2.7, gluta...		Potri.018G012900 [exp]	4.47	0.9420
AT1G17840		AtABCG11, WBC11...	DESPERADO, CUTICULAR DEFECT AN...		Potri.005G073050 [exp]	5.74	0.9381
AT1G65730		YSL7	YELLOW STRIPE like 7 (.1)		Potri.017G151800 [exp]	8.94	0.9337
AT3G17650		YSL5, PDE321	pigment defective 321, YELLOW ...		Potri.017G151232 [exp]	10.67	0.9309
AT2G29100		ATGLR2.9	GLUTAMATE RECEPTOR 2.9, gluta...		Potri.004G052500 [exp]	14.42	0.9302
AT4G10770		ATOPT7	ARABIDOPSIS THALIANA OLIGOPEPT...		Potri.007G056900 [exp]	15.19	0.8697
AT3G24420			alpha/beta-Hydrolases superfam...		Potri.006G155500 [exp]	17.32	0.9100

Compare expression of checked genes

Potri.005G073100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.