Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G39952 892 / 0 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G03580 446 / 3e-144 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G69350 423 / 1e-136 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G18750 411 / 4e-131 DOT4 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G18485 407 / 2e-128 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G21300 400 / 3e-127 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G74600 399 / 2e-126 OTP87 organelle transcript processing 87, pentatricopeptide (PPR) repeat-containing protein (.1) AT3G57430 390 / 7e-123 OTP84 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G09040 389 / 3e-121 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G27110 379 / 5e-121 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G067000 [exp] 438 / 2e-142 AT1G18485 500 / 8e-164 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.018G067500 [exp] 436 / 5e-139 AT4G13650 590 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.015G047600 [exp] 433 / 3e-138 AT1G18485 1077 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.008G093000 [exp] 424 / 2e-137 AT1G69350 832 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.011G156800 [exp] 424 / 2e-136 AT4G21300 842 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G059400 [exp] 424 / 9e-136 AT4G18750 1110 / 0.0 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.008G052200 [exp] 416 / 6e-133 AT2G39620 816 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G137900 [exp] 408 / 6e-129 AT3G09040 421 / 3e-131 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.004G047800 [exp] 400 / 3e-126 AT4G13650 654 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038138 [exp] 988 / 0 AT4G39952 793 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10010688 [exp] 779 / 0 AT4G39952 637 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10007806 [exp] 435 / 6e-140 AT3G03580 967 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10015225 [exp] 417 / 4e-133 AT4G18750 990 / 0.0 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10008967 [exp] 408 / 4e-130 AT4G21300 876 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10014707 [exp] 407 / 8e-129 AT3G63370 893 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 86, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10004081 [exp] 403 / 3e-127 AT3G63370 893 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 86, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10028855 [exp] 407 / 6e-126 AT4G21300 873 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10002054 [exp] 398 / 6e-126 AT1G74600 930 / 0.0 organelle transcript processing 87, pentatricopeptide (PPR) repeat-containing protein (.1) Lus10030415 [exp] 394 / 7e-125 AT1G69350 814 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF01535 [poplar] [flax] PPR PPR repeat CL0020 [poplar] [flax] TPR PF13041 [poplar] [flax] PPR_2 PPR repeat family
Representative CDS sequence Show only first row Show all	>Potri.005G074000.1 pacid=42804817 polypeptide=Potri.005G074000.1.p locus=Potri.005G074000 ID=Potri.005G074000.1.v4.1 annot-version=v4.1 ATGGTAATCCTTAAACCCGCCCACCATCTCTTTAGACGCCTTTTTCCCTCTCCTTTTCAAATTTCTTACCATTCATCTTCTAACTACCTTAACTGTCACA TAGACTCTTTTCTCTCTAACCAGACCCAAACTCTCCAATCTCTACACAAATCCCATGCTCTCATAATCACTACTGGCAATGCAAACAATGTTTTTATATC ATCAAAACTTATCTCTCTCTATGCATCTTTCAGAAAACCCCATTCATCCACCTATGTTTTTGACTCAACAAATCAAAAAGACACCTTTCTTTGGAATTCA ATCATCAAATCTCACTTTTCCAATGGGAATTACTTCAAAGCTTTTGACTTTTACATCCAAATGCGGTATGATAATACCCCACCAAACCAATTTACAATTC CCATGATTGTAGCCACTTGTGCCGAGCTCTTGTGGCTTGAAGAGGGGAAATACATTCATGGGCTGGTCTCAAAATCTGGCCTTTTTGCGGAAAATTCTGC GGTTGGGTCATCTTTTGTTTACATGTACGCTAAATGTGGGGTTATGGAGGATGCATCTCTTATGTTTGATGAAATTGTTGTTAGAGATGTGGTGTCTTGG ACTGCACTTGTAATCGGGTATGTGCATAATGATGACAGTGAGAAGGGTTTGGAGTGTCTTTGTGAGATGCGTAGGATTGGCGGGGATGGTGAGAAGGTTA ATTCTAGGACACTAGAAGGTGGGTTTCAAGCTTGTGGGAATTTGGGTGCTATGATTGCAGGAAGGTGTCTGCATGGTTTAGCTGTGAAAACTGGACTTGG GTGCTCTCAAGTTGTTCAATCTTCTCTTTTGTCAATGTATTCCAAGTGTGGGAATGTTGAAGAGGCTCATAATTCTTTTTGTCAAGTTGTGGATAAAGAT GTTTTCTCATGGACATCAGTAATTGGTGTTTGTGCAAGATTTGGGTTTATGAATGAGTGCTTAAACCTGTTTTGGGATATGCAGGTTGATGATGTGTATC CAGATGGGATTGTTGTAAGTTGCATCCTTTTGGGTTTTGGTAATTCCATGATGGTGAGAGAGGGAAAAGCCTTTCATGGACTGATTGTAAGGAGAAACTA TGTTTTGGACGATACGGTTAACAATGCTTTGTTATCCATGTATTGCAAGTTTGGAACTTTAAACCCCGCAGAGAAGCTTTTTGATGGTGTACATGAATGG AGTAAAGAGTCATGGAACACTATGGTTTTTGGATATGGTAAGATGGGAATAGAAGGGAAGTGTATAGAATTATTTAGGGAGATGAGAGATCTAGGCATTG AAGCTGATTCAAACAGCCTGGTCTCTGTAATTTCTTCGTGCTCTAAATTGGGACTGATTAATCTATGTCGATCAGTTCATTGTTACATAATTAAGAATTC AGTGGATGAAGATGTCTCAATCGCCAATTCACTTATAGACATGTACGGAAAAGGTGGTAATTTGTCCATTGCATGGAAAATGTTTTGTAGGACGCAGAGA GATGTTGTCACATGGAACACCTTGATCTCATCATATACTCACAGTGGGCACTACGCAGAGGCTATCACATTATTCGATGAAATGATTTCAGAAAAATTAA ACCCTAATTCAGCAACATTGGTTATAGTTCTTTCAGCTTGCTGTCATCTCCCATCCTTAGAGAAAGGAAAAATGGTTCACCAATATATTAAGGAAGGAGG ATTTGAGCTCAATGTTTCTCTTGGTACTGCATTGGTTGATATGTATGCAAAATGTGGTCAACTTGAACAATCAAGAGAATTGTTCAACTCAATGAAGGAG AAAGATGTCATTTCTTGGAATGTAATGATCTCAGGTTATGGACTGCATGGAGATGCAAATTCTGCAATGGAGGTTTTCCAACAAATGGAGCAATCAAATG TTAAACCGAATGCAATTACCTTTCTATCACTTCTCTCAGCTTGCACTCATGCAGGATATGTTGATGAAGGGAAGCAACTGTTCGATAGAATGCAATATTA TTCTATAAAACCCAATCTAAAGCATTTTGCTTGTATGGCAGATCTTCTTGGAAGATCAGGTAACCTACAAGAAGCTGAAGATCTGGTTCAGTCAATGCCA ATTTGTCCTGATGGAGGTGTTTGGGGAACTTTGTTAAGTGCTTGTAAAATTCATAATGAAATTGAGATAGGAATAAGGGTGGCAAAATGTGCTATTGAAT CTGACCCAGAAAATGATGGGTACTATATAATGCTTTCCAACATGTATGGTTCTATGGGAAAATGGGATGAGGCTGAAAGAGCAAGGGAACTGATGAAGGA AAGGGGAATAGGGAAGAGAGCTGGTTGGAGTGCAGTGTAG
AA sequence Show only first row Show all	>Potri.005G074000.1 pacid=42804817 polypeptide=Potri.005G074000.1.p locus=Potri.005G074000 ID=Potri.005G074000.1.v4.1 annot-version=v4.1 MVILKPAHHLFRRLFPSPFQISYHSSSNYLNCHIDSFLSNQTQTLQSLHKSHALIITTGNANNVFISSKLISLYASFRKPHSSTYVFDSTNQKDTFLWNS IIKSHFSNGNYFKAFDFYIQMRYDNTPPNQFTIPMIVATCAELLWLEEGKYIHGLVSKSGLFAENSAVGSSFVYMYAKCGVMEDASLMFDEIVVRDVVSW TALVIGYVHNDDSEKGLECLCEMRRIGGDGEKVNSRTLEGGFQACGNLGAMIAGRCLHGLAVKTGLGCSQVVQSSLLSMYSKCGNVEEAHNSFCQVVDKD VFSWTSVIGVCARFGFMNECLNLFWDMQVDDVYPDGIVVSCILLGFGNSMMVREGKAFHGLIVRRNYVLDDTVNNALLSMYCKFGTLNPAEKLFDGVHEW SKESWNTMVFGYGKMGIEGKCIELFREMRDLGIEADSNSLVSVISSCSKLGLINLCRSVHCYIIKNSVDEDVSIANSLIDMYGKGGNLSIAWKMFCRTQR DVVTWNTLISSYTHSGHYAEAITLFDEMISEKLNPNSATLVIVLSACCHLPSLEKGKMVHQYIKEGGFELNVSLGTALVDMYAKCGQLEQSRELFNSMKE KDVISWNVMISGYGLHGDANSAMEVFQQMEQSNVKPNAITFLSLLSACTHAGYVDEGKQLFDRMQYYSIKPNLKHFACMADLLGRSGNLQEAEDLVQSMP ICPDGGVWGTLLSACKIHNEIEIGIRVAKCAIESDPENDGYYIMLSNMYGSMGKWDEAERARELMKERGIGKRAGWSAV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G39952			Pentatricopeptide repeat (PPR)...		Potri.005G074000 [exp]	0	1
AT1G56690			Pentatricopeptide repeat (PPR)...		Potri.013G005400 [exp]	1.41	0.9225
AT4G21065			Tetratricopeptide repeat (TPR)...		Potri.006G252400 [exp]	4.24	0.8565
AT3G20440		EMB2729, BE1	EMBRYO DEFECTIVE 2729, BRANCHI...		Potri.001G359200 [exp]	7.48	0.8845
AT1G31430			Pentatricopeptide repeat (PPR-...		Potri.003G088600 [exp]	9.16	0.8708
AT1G74350			Intron maturase, type II famil...		Potri.005G063750 [exp]	9.79	0.8819
AT1G24340		EMB260, EMB2421	EMBRYO DEFECTIVE 260, EMBRYO D...		Potri.008G178400 [exp]	11.48	0.8218
AT3G61780		EMB1703	embryo defective 1703 (.1)		Potri.014G099100 [exp]	14.31	0.8726
AT1G56690			Pentatricopeptide repeat (PPR)...		Potri.005G006400 [exp]	14.42	0.8743
AT5G03770		AtKdtA, KDTA	KDO transferase A (.1)		Potri.016G095900 [exp]	16.88	0.7850
AT3G09360			Cyclin/Brf1-like TBP-binding p...		Potri.001G246100 [exp]	16.97	0.8512

Compare expression of checked genes

Potri.005G074000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.