Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G39955 415 / 3e-146 alpha/beta-Hydrolases superfamily protein (.1) AT5G09430 377 / 2e-131 alpha/beta-Hydrolases superfamily protein (.1) AT1G78210 307 / 3e-104 alpha/beta-Hydrolases superfamily protein (.1) AT5G21950 190 / 2e-58 alpha/beta-Hydrolases superfamily protein (.1) AT1G17430 177 / 6e-53 alpha/beta-Hydrolases superfamily protein (.1) AT2G18360 176 / 7e-53 alpha/beta-Hydrolases superfamily protein (.1) AT1G72620 174 / 5e-52 alpha/beta-Hydrolases superfamily protein (.1) AT4G33180 172 / 2e-51 alpha/beta-Hydrolases superfamily protein (.1) AT4G36610 147 / 5e-42 alpha/beta-Hydrolases superfamily protein (.1) AT4G36530 62 / 8e-11 alpha/beta-Hydrolases superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G094700 [exp] 566 / 0 AT4G39955 400 / 1e-140 alpha/beta-Hydrolases superfamily protein (.1) Potri.001G313100 [exp] 412 / 3e-145 AT5G09430 466 / 7e-167 alpha/beta-Hydrolases superfamily protein (.1) Potri.002G097400 [exp] 410 / 1e-144 AT1G78210 407 / 1e-143 alpha/beta-Hydrolases superfamily protein (.1) Potri.006G219400 [exp] 206 / 9e-65 AT4G33180 329 / 3e-113 alpha/beta-Hydrolases superfamily protein (.1) Potri.001G168600 [exp] 199 / 1e-61 AT1G17430 282 / 1e-93 alpha/beta-Hydrolases superfamily protein (.1) Potri.004G155800 [exp] 163 / 5e-48 AT2G18360 340 / 3e-117 alpha/beta-Hydrolases superfamily protein (.1) Potri.004G155700 [exp] 155 / 6e-45 AT2G18360 317 / 4e-108 alpha/beta-Hydrolases superfamily protein (.1) Potri.009G117000 [exp] 155 / 8e-45 AT2G18360 311 / 7e-106 alpha/beta-Hydrolases superfamily protein (.1) Potri.005G122600 [exp] 154 / 2e-44 AT2G18360 444 / 5e-158 alpha/beta-Hydrolases superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023147 [exp] 466 / 1e-166 AT4G39955 414 / 3e-146 alpha/beta-Hydrolases superfamily protein (.1) Lus10000630 [exp] 441 / 4e-157 AT4G39955 386 / 2e-135 alpha/beta-Hydrolases superfamily protein (.1) Lus10020926 [exp] 333 / 5e-114 AT1G78210 358 / 3e-124 alpha/beta-Hydrolases superfamily protein (.1) Lus10036159 [exp] 229 / 6e-75 AT5G09430 308 / 3e-106 alpha/beta-Hydrolases superfamily protein (.1) Lus10019631 [exp] 208 / 6e-65 AT1G72620 270 / 3e-89 alpha/beta-Hydrolases superfamily protein (.1) Lus10038076 [exp] 197 / 3e-61 AT4G33180 333 / 8e-115 alpha/beta-Hydrolases superfamily protein (.1) Lus10012409 [exp] 186 / 2e-56 AT1G17430 259 / 1e-84 alpha/beta-Hydrolases superfamily protein (.1) Lus10022106 [exp] 181 / 7e-55 AT1G72620 264 / 4e-87 alpha/beta-Hydrolases superfamily protein (.1) Lus10041747 [exp] 154 / 3e-44 AT2G18360 436 / 1e-154 alpha/beta-Hydrolases superfamily protein (.1) Lus10025873 [exp] 123 / 7e-33 AT2G18360 243 / 2e-79 alpha/beta-Hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [poplar] [flax] AB_hydrolase PF12695 [poplar] [flax] Abhydrolase_5 Alpha/beta hydrolase family
Representative CDS sequence Show only first row Show all	>Potri.005G074066.1 pacid=42805406 polypeptide=Potri.005G074066.1.p locus=Potri.005G074066 ID=Potri.005G074066.1.v4.1 annot-version=v4.1 ATGGCAAAGTGCTTTAGTTTTGCTGCAACACAGGACTCATGCTACCGTTACTCCTTCACTCGAGCAGGCCTAAAATCATCCACAACCGACCTCGGCGACG GCACGATCATGCACTGTTGGATCCCAAAGAGACACAAACCATCAAAACCTACGTTACTATTAATCCACGGCTTCGGTGCCAACGCAATGTGGCAATTCAA CGGTCTAATCCCGCAGTTCATGCCCAGATTCAACGTTTATGTACCGGACCTCCTATTCTTCGGAGAATCCTACACAACAAGAGCAGAAAGGTCCGAGTCG TTCCAAGCGCAATGCGTTATGAGCCTAATGGAAGCCCAAAAAGTAACCAAGATGGACGTGTTTGGGCTGAGCTATGGCGGGTTCGTGGCGTATAGCATGG CGGCACAGTTTAAAGAGCGCGTGGGGCGCGTGGCTCTAGGATGTGCCGGGGTATGTTTTGAAGAGAAGGATGTGGGTGGTGGAGGAGTGTTTAAGGTGGT GACAAGTATTGAGGAAGCTGCTGAGGTCTTGATTCCACAAACACCTGAAAAAGCTAGACAGTTGGTGAGGTTGTCTTTTTATAAACCACCATCAAGTATG CCCTCTTGTTTTCTTCAAGATTTTATCGAGGTAATGTGCACTGATTTCCGTCAAGAGAAGGAAGAATTAATCCAGGCATTACACAAAGATAGAAAGATGT CAGATCTTCCTAAGATAACTCAGCCTACACTAATAATCTGGGGAGAACATGACCAGGTTTTCCCCCTGGAATTGGCACACAGATTAGAAAGGCATATCGG AGATAATGCAGAATTAGTGATAATAAAGAATGTCGGTCATGCACTCAATGCAGAGAGGCCTAAGGAGCTGTATAAGCACTTAAAGTCTTTCTTCATTGAC AGTCATCCTTTATCAAAGCAAGCAAGCCACGGAAACGGTACTAAGTCAGATTGA
AA sequence Show only first row Show all	>Potri.005G074066.1 pacid=42805406 polypeptide=Potri.005G074066.1.p locus=Potri.005G074066 ID=Potri.005G074066.1.v4.1 annot-version=v4.1 MAKCFSFAATQDSCYRYSFTRAGLKSSTTDLGDGTIMHCWIPKRHKPSKPTLLLIHGFGANAMWQFNGLIPQFMPRFNVYVPDLLFFGESYTTRAERSES FQAQCVMSLMEAQKVTKMDVFGLSYGGFVAYSMAAQFKERVGRVALGCAGVCFEEKDVGGGGVFKVVTSIEEAAEVLIPQTPEKARQLVRLSFYKPPSSM PSCFLQDFIEVMCTDFRQEKEELIQALHKDRKMSDLPKITQPTLIIWGEHDQVFPLELAHRLERHIGDNAELVIIKNVGHALNAERPKELYKHLKSFFID SHPLSKQASHGNGTKSD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G39955			alpha/beta-Hydrolases superfam...		Potri.005G074066 [exp]	0	1
AT3G29400		ATEXO70E1	exocyst subunit exo70 family p...		Potri.017G093700 [exp]	2.23	0.8990
					Potri.012G121504 [exp]	4.47	0.8611
AT1G78340		ATGSTU22	glutathione S-transferase TAU ...		Potri.019G130566 [exp]	8.06	0.8393
AT2G41180		SIB2	sigma factor binding protein 2...		Potri.013G043800 [exp]	10.00	0.8491
AT4G29050			Concanavalin A-like lectin pro...		Potri.003G196600 [exp]	10.09	0.8500
AT1G60810		ACLA-2	ATP-citrate lyase A-2 (.1)		Potri.008G188900 [exp]	10.09	0.7398	Pt-ACLA.1
AT1G17180		ATGSTU25	glutathione S-transferase TAU ...		Potri.019G130433 [exp]	10.19	0.8258
AT1G60710		ATB2	NAD(P)-linked oxidoreductase s...		Potri.013G040000 [exp]	13.00	0.8124
AT2G22860		ATPSK2	phytosulfokine 2 precursor (.1...		Potri.002G116300 [exp]	14.00	0.8337
					Potri.006G260875 [exp]	16.49	0.8048

Compare expression of checked genes

Potri.005G074066 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.