Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G10290 855 / 0 leucine-rich repeat transmembrane protein kinase family protein (.1) AT5G65240 786 / 0 Leucine-rich repeat protein kinase family protein (.1.2) AT5G63710 561 / 0 Leucine-rich repeat protein kinase family protein (.1) AT4G33430 550 / 0 SERK3, RKS10, ELG, BAK1, ATSERK3, ATBAK1 RECEPTOR KINASES LIKE SERK 10, ELONGATED, SOMATIC EMBRYOGENESIS RECEPTOR-LIKE KINASE 3, BRI1-associated receptor kinase (.1.2) AT5G16000 484 / 2e-164 NIK1 NSP-interacting kinase 1 (.1) AT1G71830 474 / 8e-161 ATSERK1, SERK1 somatic embryogenesis receptor-like kinase 1 (.1) AT1G34210 461 / 2e-155 ATSERK2, SERK2 somatic embryogenesis receptor-like kinase 2 (.1) AT2G13790 423 / 9e-141 BAK7, BKK1, ATSERK4 BAK1-LIKE 1, BRI1- ASSOCIATED KINASE 7, somatic embryogenesis receptor-like kinase 4 (.1) AT3G25560 414 / 5e-137 NIK2 NSP-interacting kinase 2 (.1.2.3) AT2G13800 411 / 2e-136 BAK8, ATSERK5 BRI1- ASSOCIATED KINASE 8, SOMATIC EMBRYOGENESIS RECEPTOR LIKE KINASE 5, somatic embryogenesis receptor-like kinase 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G094500 [exp] 990 / 0 AT5G10290 837 / 0.0 leucine-rich repeat transmembrane protein kinase family protein (.1) Potri.001G306000 [exp] 580 / 0 AT5G63710 791 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.019G001800 [exp] 580 / 0 AT5G63710 782 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.003G023000 [exp] 546 / 0 AT4G33430 961 / 0.0 RECEPTOR KINASES LIKE SERK 10, ELONGATED, SOMATIC EMBRYOGENESIS RECEPTOR-LIKE KINASE 3, BRI1-associated receptor kinase (.1.2) Potri.004G108200 [exp] 510 / 7e-175 AT5G16000 1006 / 0.0 NSP-interacting kinase 1 (.1) Potri.017G108000 [exp] 509 / 2e-174 AT5G16000 995 / 0.0 NSP-interacting kinase 1 (.1) Potri.010G043200 [exp] 489 / 2e-166 AT1G60800 925 / 0.0 NSP-interacting kinase 3 (.1) Potri.008G188800 [exp] 488 / 6e-166 AT1G60800 930 / 0.0 NSP-interacting kinase 3 (.1) Potri.006G179400 [exp] 481 / 4e-163 AT2G23950 889 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000629 [exp] 877 / 0 AT5G10290 914 / 0.0 leucine-rich repeat transmembrane protein kinase family protein (.1) Lus10023146 [exp] 663 / 0 AT5G10290 680 / 0.0 leucine-rich repeat transmembrane protein kinase family protein (.1) Lus10020962 [exp] 551 / 0 AT4G33430 989 / 0.0 RECEPTOR KINASES LIKE SERK 10, ELONGATED, SOMATIC EMBRYOGENESIS RECEPTOR-LIKE KINASE 3, BRI1-associated receptor kinase (.1.2) Lus10034350 [exp] 504 / 3e-172 AT5G16000 1018 / 0.0 NSP-interacting kinase 1 (.1) Lus10005103 [exp] 496 / 6e-169 AT5G16000 998 / 0.0 NSP-interacting kinase 1 (.1) Lus10034413 [exp] 483 / 4e-164 AT5G16000 937 / 0.0 NSP-interacting kinase 1 (.1) Lus10019145 [exp] 482 / 9e-164 AT5G16000 935 / 0.0 NSP-interacting kinase 1 (.1) Lus10006057 [exp] 475 / 6e-162 AT1G71830 954 / 0.0 somatic embryogenesis receptor-like kinase 1 (.1) Lus10028716 [exp] 474 / 6e-161 AT1G71830 1000 / 0.0 somatic embryogenesis receptor-like kinase 1 (.1) Lus10019963 [exp] 457 / 5e-153 AT2G23950 907 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain CL0016 [poplar] [flax] PF08263 [poplar] [flax] LRRNT_2 Leucine rich repeat N-terminal domain CL0022 [poplar] [flax] LRR PF13855 [poplar] [flax] LRR_8 Leucine rich repeat
Representative CDS sequence Show only first row Show all	>Potri.005G074200.6 pacid=42802573 polypeptide=Potri.005G074200.6.p locus=Potri.005G074200 ID=Potri.005G074200.6.v4.1 annot-version=v4.1 ATGGATCGAGCACCTGGGTTGATGTCATTGAAGATGGAAATGATCTTTGCAGCCTTAATATTGGCTTTCTTGCAATCCTTTGTATTGTCTGACCCACAAG GAGATGCCCTATATGCATTGAAGCTTTCGATGAATATTCCAAACAATCAATTGACAGATTGGAACCAGAATCAAGTTAATCCATGCACTTGGACGAATGT TATCTGTGACAAAAGCAATAATGTCGTTTCTGTAACGCTATCCGACATCAACTGTTCTGGGATCTTGTCTCCTATGATAGGAGCTCTAAGGACTCTCACT ACACTAACACTGAAAGGGAATGGCATAACTGGTGGGATACCAAAAGAGTTCGGAAATTTGTCAAGTTTGACCAGCTTAGATTTGGAAAATAATCGTTTAA GTGGTGAAATACCATCTTCCCTGGGTGATCTTAAAAAACTACAATTTTTCAGGACATTGAGTCAAAACAATCTCAGTGGAGCTATCCCTGAATCACTTGC TAGTCTTGAAAGCTTAATCAATATTCTGCTCGATTCAAATAATCTCAGTGGTCAAGTTCCTAATCATTTATTCCAAATTCCTAAATACAATTTTACAGGA AACCACTTAAATTGTGGTGGGCTGAATTTGCATCTCTGTGAATCTTATAGTGGTGATTCAGGTGGTTCACATAAGTCAAAGATTGGAATTATAGTTGGAG TTGTGGGAGGATTTGTAATTCTTTTTCTGCTTGGAGGCTTGCTATTTTTTGTTTGCAAGGGTAGACGCAAAGGCTACAGACGTGAAATATTTGTAGATGT TGCAGGTGAAGTGGATCGAAGAATAGCATTTGGTCAGTTAAAACGATTTGCATGGAGGGAATTGCAGCTTGCCACAGACAACTTCAGTGAGGAAAATATC CTTGGACAAGGAGGATTTGGAAAAGTTTATAAAGGAGTGCTTGCTGATAATACCAAAGTTGCCGTGAAGCGTTTAACTGATTTTGAAAGTCCTGGGGGTG ATGCAGCATTCCAACGTGAAGTTGAGATGATAAGTGTAGCTGTTCACAGGAACTTATTACGTCTGATAGGGTTTTGCACAACGACAACAGAACGCCTCTT GGTGTATCCATTCATGCAGAATTTAAGTGTGGCCTATCGTCTAAGAGAGCGTAAACCTGAGGAGCCTGTTTTAGATTGGACAACCAGAAAAAGAGTGGCC TTAGGTGCAGCGCGTGGCCTGGAATACCTTCACGAGCACTGCAATCCTAAAATTATTCATCGTGATGTGAAAGCAGCTAATGTACTACTTGATGAAGATT TTGAAGCAGTTGTTGGTGATTTTGGCCTTGCAAAGCTGATGGATGTGAGAAAGACTAACGTGACTACTCAAGTTCGTGGGACAATGGGCCACATAGCACC AGAATACTTGTCCACTGGCAAGTCATCTGGAAGGACTGATGTCTTTGGGTATGGGATAATGCTTCTGGAGCTTGTTACAGGTCAACGTGCAATTGACTTT TCACGCCTGGAAGAAGAAGATGATGTCCTATTGCTTGACCATGTCAAGAAGCTGGAGAGGGAGAAAAGACTGGATGCTATTGTAGATCGCAACTTAAATA AAAACTACAACATCCAGGAGGTGGAGATGATGATAAAAGTTGCTTTGCTCTGTACCCAAGCGTCGCCAGAGGACCGTCCAGCAATGTCGGAGGTTGTGCG GATGCTAGAAGGAGAGGGGCTTGCTGAAAGGTGGGAAGAATGGCAGCACGTTGAAGTTACAAGAAGGGAAGAATACAGCAGATTGCAGAGAAGATTTGAC TTTGGAGAAGATTCACTTTATAACCAAGATGCTATTGAGTTATCTGGTGGAAGATGA
AA sequence Show only first row Show all	>Potri.005G074200.6 pacid=42802573 polypeptide=Potri.005G074200.6.p locus=Potri.005G074200 ID=Potri.005G074200.6.v4.1 annot-version=v4.1 MDRAPGLMSLKMEMIFAALILAFLQSFVLSDPQGDALYALKLSMNIPNNQLTDWNQNQVNPCTWTNVICDKSNNVVSVTLSDINCSGILSPMIGALRTLT TLTLKGNGITGGIPKEFGNLSSLTSLDLENNRLSGEIPSSLGDLKKLQFFRTLSQNNLSGAIPESLASLESLINILLDSNNLSGQVPNHLFQIPKYNFTG NHLNCGGLNLHLCESYSGDSGGSHKSKIGIIVGVVGGFVILFLLGGLLFFVCKGRRKGYRREIFVDVAGEVDRRIAFGQLKRFAWRELQLATDNFSEENI LGQGGFGKVYKGVLADNTKVAVKRLTDFESPGGDAAFQREVEMISVAVHRNLLRLIGFCTTTTERLLVYPFMQNLSVAYRLRERKPEEPVLDWTTRKRVA LGAARGLEYLHEHCNPKIIHRDVKAANVLLDEDFEAVVGDFGLAKLMDVRKTNVTTQVRGTMGHIAPEYLSTGKSSGRTDVFGYGIMLLELVTGQRAIDF SRLEEEDDVLLLDHVKKLEREKRLDAIVDRNLNKNYNIQEVEMMIKVALLCTQASPEDRPAMSEVVRMLEGEGLAERWEEWQHVEVTRREEYSRLQRRFD FGEDSLYNQDAIELSGGR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G10290			leucine-rich repeat transmembr...		Potri.005G074200 [exp]	0	1
AT1G53440			Leucine-rich repeat transmembr...		Potri.001G386300 [exp]	1.41	0.8893
AT5G22460			alpha/beta-Hydrolases superfam...		Potri.004G203700 [exp]	1.73	0.8794
AT5G12200		PYD2	pyrimidine 2 (.1)		Potri.001G273400 [exp]	3.46	0.8730
AT3G52850		VSR1;1, GFS1, B...	VACUOLAR SORTING RECEPTOR 1;1,...		Potri.016G137350 [exp]	3.74	0.8698
AT1G66920			Protein kinase superfamily pro...		Potri.015G018000 [exp]	4.00	0.8784
AT5G58720			smr (Small MutS Related) domai...		Potri.009G046300 [exp]	4.35	0.8500
AT5G07610			F-box family protein (.1)		Potri.013G065500 [exp]	7.34	0.8207
AT1G22990		HIPP22	heavy metal associated isopren...		Potri.010G114600 [exp]	8.12	0.8478
AT3G57330		ACA11	autoinhibited Ca2+-ATPase 11, ...		Potri.006G046500 [exp]	8.48	0.8613
AT4G15080			DHHC-type zinc finger family p...		Potri.016G018400 [exp]	8.66	0.8447

Compare expression of checked genes

Potri.005G074200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.