Plant FIBer expression Database

Potri.005G074350 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G14276 66 / 2e-15 Defensin-like (DEFL) family protein (.1)
AT5G52605 61 / 7e-14 Defensin-like (DEFL) family protein (.1)
AT5G19315 50 / 9e-10 Defensin-like (DEFL) family protein (.1)
AT5G08315 49 / 5e-09 Defensin-like (DEFL) family protein (.1)
AT5G08055 45 / 1e-07 Defensin-like (DEFL) family protein (.1)
AT5G39645 39 / 2e-05 Defensin-like (DEFL) family protein (.1)
AT1G33607 39 / 4e-05 Defensin-like (DEFL) family protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.013G113550
[exp]
90 / 2e-25 AT5G52605 67 / 3e-16 Defensin-like (DEFL) family protein (.1)
Potri.013G113600
[exp]
89 / 3e-25 AT5G52605 76 / 8e-20 Defensin-like (DEFL) family protein (.1)
Potri.016G130300
[exp]
89 / 9e-25 AT5G52605 64 / 3e-15 Defensin-like (DEFL) family protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10033170
[exp]
57 / 6e-12 AT5G52605 49 / 7e-09 Defensin-like (DEFL) family protein (.1)
Lus10031095
[exp]
54 / 1e-10 AT5G52605 46 / 8e-08 Defensin-like (DEFL) family protein (.1)
Lus10013114
[exp]
50 / 2e-09 AT5G52605 45 / 2e-07 Defensin-like (DEFL) family protein (.1)
PFAM info
Representative CDS sequence
>Potri.005G074350.1 pacid=42803928 polypeptide=Potri.005G074350.1.p locus=Potri.005G074350 ID=Potri.005G074350.1.v4.1 annot-version=v4.1
ATGGCTAGGAAGAATATTTTTTCCATTGTTCTTATGCTAGTCCTCTTGTTGTTCATAGGCTGTGATATGATGGTTGCCCAGAAACAGTGTTGCACTGAAC
ATTTTGAACTTGGCACCTGCTTGCCAGGTCAAGACGATAAAAATCCATCTGGAAAATGCTTCAAGTATTGTATAAAGAGTTGCCCTAATCACAAAGGAGG
CGTTTGCAAGCTATGGGGTAACAAGCATCATTGTCATTGCTTATGTTGA
AA sequence
>Potri.005G074350.1 pacid=42803928 polypeptide=Potri.005G074350.1.p locus=Potri.005G074350 ID=Potri.005G074350.1.v4.1 annot-version=v4.1
MARKNIFSIVLMLVLLLFIGCDMMVAQKQCCTEHFELGTCLPGQDDKNPSGKCFKYCIKSCPNHKGGVCKLWGNKHHCHCLC

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Download tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT4G14276 Defensin-like (DEFL) family pr... Potri.005G074350
[exp]
0 1

Potri.005G074350 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.