Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G19540 631 / 0 Transducin family protein / WD-40 repeat family protein (.1) AT2G16780 123 / 8e-31 MSI02, NFC2, NFC02, MSI2 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP C 2, MULTICOPY SUPPRESSOR OF IRA1 2, Transducin family protein / WD-40 repeat family protein (.1) AT5G58230 120 / 1e-29 MSI1, MEE70, ATMSI1 MATERNAL EFFECT EMBRYO ARREST 70, ARABIDOPSIS MULTICOPY SUPRESSOR OF IRA1, Transducin/WD40 repeat-like superfamily protein (.1) AT4G35050 115 / 9e-28 NFC3, MSI3 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP C 3, MULTICOPY SUPPRESSOR OF IRA1 3, Transducin family protein / WD-40 repeat family protein (.1) AT2G19520 112 / 2e-26 ATMSI4, ACG1, NFC4, NFC04, FVE MULTICOPY SUPPRESSOR OF IRA1 4, Transducin family protein / WD-40 repeat family protein (.1) AT4G29730 100 / 3e-22 MSI5, NFC5 nucleosome/chromatin assembly factor group C5 (.1) AT1G29260 67 / 5e-12 PEX7, ATPEX7 ARABIDOPSIS PEROXIN 7, peroxin 7 (.1) AT5G52820 64 / 9e-11 WD-40 repeat family protein / notchless protein, putative (.1) AT3G63460 64 / 1e-10 EMB2221 transducin family protein / WD-40 repeat family protein (.1.2.3) AT4G34460 61 / 3e-10 ELK4, AGB1, ATAGB1 ERECTA-LIKE 4, GTP binding protein beta 1 (.1.2.3.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G094000 [exp] 784 / 0 AT2G19540 623 / 0.0 Transducin family protein / WD-40 repeat family protein (.1) Potri.004G175300 [exp] 117 / 9e-29 AT2G16780 593 / 0.0 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP C 2, MULTICOPY SUPPRESSOR OF IRA1 2, Transducin family protein / WD-40 repeat family protein (.1) Potri.002G216200 [exp] 116 / 2e-28 AT5G58230 784 / 0.0 MATERNAL EFFECT EMBRYO ARREST 70, ARABIDOPSIS MULTICOPY SUPRESSOR OF IRA1, Transducin/WD40 repeat-like superfamily protein (.1) Potri.009G135100 [exp] 116 / 2e-28 AT2G16780 612 / 0.0 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP C 2, MULTICOPY SUPPRESSOR OF IRA1 2, Transducin family protein / WD-40 repeat family protein (.1) Potri.014G179700 [exp] 115 / 7e-28 AT5G58230 790 / 0.0 MATERNAL EFFECT EMBRYO ARREST 70, ARABIDOPSIS MULTICOPY SUPRESSOR OF IRA1, Transducin/WD40 repeat-like superfamily protein (.1) Potri.003G038800 [exp] 112 / 2e-26 AT2G19520 720 / 0.0 MULTICOPY SUPPRESSOR OF IRA1 4, Transducin family protein / WD-40 repeat family protein (.1) Potri.018G068200 [exp] 107 / 9e-25 AT2G19520 812 / 0.0 MULTICOPY SUPPRESSOR OF IRA1 4, Transducin family protein / WD-40 repeat family protein (.1) Potri.006G151800 [exp] 105 / 3e-24 AT2G19520 814 / 0.0 MULTICOPY SUPPRESSOR OF IRA1 4, Transducin family protein / WD-40 repeat family protein (.1) Potri.004G057600 [exp] 66 / 1e-11 AT1G29260 556 / 0.0 ARABIDOPSIS PEROXIN 7, peroxin 7 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024403 [exp] 678 / 0 AT2G19540 659 / 0.0 Transducin family protein / WD-40 repeat family protein (.1) Lus10025341 [exp] 667 / 0 AT2G19540 668 / 0.0 Transducin family protein / WD-40 repeat family protein (.1) Lus10027848 [exp] 123 / 8e-31 AT4G35050 585 / 0.0 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP C 3, MULTICOPY SUPPRESSOR OF IRA1 3, Transducin family protein / WD-40 repeat family protein (.1) Lus10005074 [exp] 122 / 3e-30 AT4G35050 590 / 0.0 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP C 3, MULTICOPY SUPPRESSOR OF IRA1 3, Transducin family protein / WD-40 repeat family protein (.1) Lus10033460 [exp] 117 / 2e-28 AT5G58230 781 / 0.0 MATERNAL EFFECT EMBRYO ARREST 70, ARABIDOPSIS MULTICOPY SUPRESSOR OF IRA1, Transducin/WD40 repeat-like superfamily protein (.1) Lus10020916 [exp] 117 / 2e-28 AT5G58230 782 / 0.0 MATERNAL EFFECT EMBRYO ARREST 70, ARABIDOPSIS MULTICOPY SUPRESSOR OF IRA1, Transducin/WD40 repeat-like superfamily protein (.1) Lus10033459 [exp] 114 / 1e-27 AT5G58230 723 / 0.0 MATERNAL EFFECT EMBRYO ARREST 70, ARABIDOPSIS MULTICOPY SUPRESSOR OF IRA1, Transducin/WD40 repeat-like superfamily protein (.1) Lus10027632 [exp] 105 / 3e-24 AT2G19520 815 / 0.0 MULTICOPY SUPPRESSOR OF IRA1 4, Transducin family protein / WD-40 repeat family protein (.1) Lus10011936 [exp] 99 / 7e-22 AT2G19520 577 / 0.0 MULTICOPY SUPPRESSOR OF IRA1 4, Transducin family protein / WD-40 repeat family protein (.1) Lus10020917 [exp] 93 / 2e-20 AT5G58230 696 / 0.0 MATERNAL EFFECT EMBRYO ARREST 70, ARABIDOPSIS MULTICOPY SUPRESSOR OF IRA1, Transducin/WD40 repeat-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [poplar] [flax] Beta_propeller PF00400 [poplar] [flax] WD40 WD domain, G-beta repeat CL0186 [poplar] [flax] PF12265 [poplar] [flax] CAF1C_H4-bd Histone-binding protein RBBP4 or subunit C of CAF1 complex
Representative CDS sequence Show only first row Show all	>Potri.005G074400.3 pacid=42803045 polypeptide=Potri.005G074400.3.p locus=Potri.005G074400 ID=Potri.005G074400.3.v4.1 annot-version=v4.1 ATGGTCCGCAGCATAAAAAATCCGAAGAAGGCAAAGAGAAAGAACAAGAAAGGAGATGAGTCATCTTCTTCTTCATCAATACCATCCATGCCTACGAAGG TCTGGCAACCAGGTGTCGACAAGCTTGGAGAAGAAGAAGAACTTGATTGTGACCCTACCGCTTACAATTCCCTTCACGCCTTTCACATTGGCTGGCCCTG CTTAAGTTTTGATGTAGTGCGCGATTCACTTGGTTTGCTTCGGACTGATTTTCCACACACAGTGTATTTTGTTGCTGGAACTCAGGCAGAAAAACCTGAT TGGAACTCAATTGGAATATTTAAAGTGTCTAATGTTTCTGGAAAACAACGTGAATTGGTGCCCTCCAAAACTACAGCTGGTGACTCTGACATGGATACTG ATAATAGTGATAGTGATGAAGACAGCGAAGATGAAGAAGAGGGAGGATCTGCAACACCAGTTTTGCAGTTGCGCAAGGTTGCTCATAGAGGATGTATTAA TCGTATACGTGCTATGACACAAAATCCCCATATATGTGCTTCTTGGTCCGATGCTGGTTATGTTCAGATATGGGATTTCAGCACTCATCTGAATGCTTTG GCAGAGTCAGAAACAGAAGTTCCCCGGGGAGCTTCTTCAGTTTTTAACCAGGCTCCATTATTTAACTTCAAAGGGCATAAAGATGAAGGCTATGCTATAG ATTGGAGTCCTCGTGTTGCTGGAAGGCTGGTAACTGGTGACTGCAAGAACTGTATTCACTTATGGGAGCCCACATCTGGTGCAACATGGAATGTTGATGC TACTCCATTTACTGGTCACACTGCGAGCGTAGAAGATCTACAATGGAGTTCCACAGAAGATCATGTGTTTGCCTCTTGTTCTGTGGATGGGCATATTGCA ATATGGGATGCACGTCTGGGGAAGTCACCAGCTATTTATTTCAAGGCACATAATGCAGATGTAAACGTGATTTCCTGGAACAGGCTGGCTAGTGTCATGT TGGCATCTGGAAGTGATGATGGAACATTTTCTATTCGTGATCTTAGATTGTTATCACCAAAATCGCAGGAAGAAGATAAATCTTTAGTGGCACATTTTCA ATACCATAAGCACCCTATCACATCCATCGAGTGGAGTCCACATGAAGCCTCCACATTGTCAGTTTCATCATCTGACAATCAACTGACAATATGGGACCTT TCCCTGGAAAAGGATGAGGAAGAGGAAGCAGAGTTCAAAGCTAAAACAAAAGAGCAAGTAAATGCCCCAGCAGATTTGCCGCCTCAACTTTTGTTTGTTC ATCAGGGACAAAAAGACTTGAAAGAACTTCACTGGCATGCTCAGATTCCAGGAATGATTGTGTCTACTGCCTCAGATGGTTTTAACATCTTGATGCCTTC AAACATACAGAGTACTCTTCCCTCTGAAGGTGTTTGA
AA sequence Show only first row Show all	>Potri.005G074400.3 pacid=42803045 polypeptide=Potri.005G074400.3.p locus=Potri.005G074400 ID=Potri.005G074400.3.v4.1 annot-version=v4.1 MVRSIKNPKKAKRKNKKGDESSSSSSIPSMPTKVWQPGVDKLGEEEELDCDPTAYNSLHAFHIGWPCLSFDVVRDSLGLLRTDFPHTVYFVAGTQAEKPD WNSIGIFKVSNVSGKQRELVPSKTTAGDSDMDTDNSDSDEDSEDEEEGGSATPVLQLRKVAHRGCINRIRAMTQNPHICASWSDAGYVQIWDFSTHLNAL AESETEVPRGASSVFNQAPLFNFKGHKDEGYAIDWSPRVAGRLVTGDCKNCIHLWEPTSGATWNVDATPFTGHTASVEDLQWSSTEDHVFASCSVDGHIA IWDARLGKSPAIYFKAHNADVNVISWNRLASVMLASGSDDGTFSIRDLRLLSPKSQEEDKSLVAHFQYHKHPITSIEWSPHEASTLSVSSSDNQLTIWDL SLEKDEEEEAEFKAKTKEQVNAPADLPPQLLFVHQGQKDLKELHWHAQIPGMIVSTASDGFNILMPSNIQSTLPSEGV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G19540			Transducin family protein / WD...		Potri.005G074400 [exp]	0	1
AT4G12640			RNA recognition motif (RRM)-co...		Potri.014G171900 [exp]	4.12	0.8555
AT3G48800			Sterile alpha motif (SAM) doma...		Potri.003G164600 [exp]	6.00	0.8332
AT1G32260			unknown protein		Potri.003G095600 [exp]	6.16	0.8511
AT4G21800		QQT2	quatre-quart2, P-loop containi...		Potri.010G148000 [exp]	12.00	0.8027
					Potri.001G371500 [exp]	14.49	0.8072
AT5G63840		PSL5, RSW3	RADIAL SWELLING 3, PRIORITY IN...		Potri.005G069000 [exp]	19.07	0.7945
AT2G20560			DNAJ heat shock family protein...		Potri.007G136700 [exp]	19.49	0.8095
AT2G42450			alpha/beta-Hydrolases superfam...		Potri.002G041000 [exp]	21.00	0.7633
AT1G15060			Uncharacterised conserved prot...		Potri.008G124400 [exp]	21.42	0.7862
AT3G58180			ARM repeat superfamily protein...		Potri.005G221700 [exp]	26.32	0.7038

Compare expression of checked genes

Potri.005G074400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.