Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	POR.1,TFCFC
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G39920 332 / 6e-113 TFCC, POR TUBULIN-FOLDING COFACTOR C, PORCINO, C-CAP/cofactor C-like domain-containing protein (.1) AT3G57890 49 / 2e-06 Tubulin binding cofactor C domain-containing protein (.1.2) AT2G42230 49 / 3e-06 C-CAP/cofactor C-like domain-containing protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G093800 [exp] 253 / 2e-83 AT4G39920 166 / 9e-50 TUBULIN-FOLDING COFACTOR C, PORCINO, C-CAP/cofactor C-like domain-containing protein (.1) Potri.006G059100 [exp] 46 / 3e-05 AT3G57890 876 / 0.0 Tubulin binding cofactor C domain-containing protein (.1.2) Potri.016G049000 [exp] 44 / 0.0001 AT3G57890 852 / 0.0 Tubulin binding cofactor C domain-containing protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006364 [exp] 360 / 1e-123 AT4G39920 344 / 1e-117 TUBULIN-FOLDING COFACTOR C, PORCINO, C-CAP/cofactor C-like domain-containing protein (.1) Lus10012318 [exp] 355 / 1e-121 AT4G39920 333 / 2e-113 TUBULIN-FOLDING COFACTOR C, PORCINO, C-CAP/cofactor C-like domain-containing protein (.1) Lus10016279 [exp] 47 / 2e-05 AT3G57890 747 / 0.0 Tubulin binding cofactor C domain-containing protein (.1.2) Lus10012025 [exp] 47 / 2e-05 AT3G57890 835 / 0.0 Tubulin binding cofactor C domain-containing protein (.1.2) Lus10023821 [exp] 47 / 2e-05 AT3G57890 875 / 0.0 Tubulin binding cofactor C domain-containing protein (.1.2) Lus10021031 [exp] 47 / 3e-05 AT3G57890 726 / 0.0 Tubulin binding cofactor C domain-containing protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0391 [poplar] [flax] CAP_C-like PF07986 [poplar] [flax] TBCC Tubulin binding cofactor C CL0391 [poplar] [flax] PF16752 [poplar] [flax] TBCC_N Tubulin-specific chaperone C N-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.005G074700.1 pacid=42803964 polypeptide=Potri.005G074700.1.p locus=Potri.005G074700 ID=Potri.005G074700.1.v4.1 annot-version=v4.1 ATGGAAGAAGAATTGCCGCCGCCGCAGTCAGATCTCCCAAGTCCAAACCCAGCCAGTTCCATTGACGCCACGCTCCAAAAAAAGCACCAAGCAATGCTAG ACCGTCTCTCCAATCGCCACCAATCCCGCCAAAAAACCGCTACCACCTCCACCACCATTGATTCCACGGCCTCCTTCCTCTCCACTTTCACAGAATCCAA ACGCTCAATCGAATCTCAACTCAACAACTCGCCTAACACACCAGATCCTACTCTCCTAAAATCTCACCTCGCTAATATCTCCTCCTCCATCTCCTCCCTC GAAAAACTCGTCGCCGAAAGCTCCTACTTTCTCCCTTCTTACGAACTCCGCTCCTCTCTCAAATGCATCGAGAATTTAAAACAATCTCTAGAGAATTTGA ATTCTCAACTTCTCCCCAAGAAGAAATTCTCCTTCAAAAACAAATCCACTAGTAAACCAAATCCCGGTAATTCAAATACAAATCCAATCCCACCAAATCC ATCTCACATACCTCAATCAATTCGCGATTCACCTGGAATTCGAAACAAAGAAAACCAAATTTTAAGCAAAAATTTCAAGAATTTTAAAGAGATTGGGGAG TTTACGCTATCGGATTTGGATTCATGTGAAGTGAGATTGATCGGCTGCATTAACGCATTATTTGTTAACAGATTGAGGAATTGTAGGGTTTATACGGGAC CTGTGATTGGTTCAATTTTGTTAGAGGAAGTCGAGAACTGCGTGTTCGTGTTAGCATCGCATCAGATAAGGATACATAATGCGAAAAGTTGTGATTTTTA TTTGAGAGTGAGGAGTAGACCGATAATTGAAGATTGTGGAGGTGTGAGGTTTGCGCCGTATTGTTTGAGGTATGTGGGCATTGAGGAGGATTTGACGAAA GCAGGGCTGGAAGAGGAGAAAGAAAATTGGGGAAATGTGGATGATTTCAAGTGGTTGAGAGCAGTGAAATCACCTAATTGGTCAGTTTTGGAGGAAAGTG AAAGGATTGGCTGTTTGGAGATTGAGGATTCGGGAAGCACTGAAGCTGAAATGGAGATTGAGGGGGTTTAG
AA sequence Show only first row Show all	>Potri.005G074700.1 pacid=42803964 polypeptide=Potri.005G074700.1.p locus=Potri.005G074700 ID=Potri.005G074700.1.v4.1 annot-version=v4.1 MEEELPPPQSDLPSPNPASSIDATLQKKHQAMLDRLSNRHQSRQKTATTSTTIDSTASFLSTFTESKRSIESQLNNSPNTPDPTLLKSHLANISSSISSL EKLVAESSYFLPSYELRSSLKCIENLKQSLENLNSQLLPKKKFSFKNKSTSKPNPGNSNTNPIPPNPSHIPQSIRDSPGIRNKENQILSKNFKNFKEIGE FTLSDLDSCEVRLIGCINALFVNRLRNCRVYTGPVIGSILLEEVENCVFVLASHQIRIHNAKSCDFYLRVRSRPIIEDCGGVRFAPYCLRYVGIEEDLTK AGLEEEKENWGNVDDFKWLRAVKSPNWSVLEESERIGCLEIEDSGSTEAEMEIEGV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G39920		TFCC, POR	TUBULIN-FOLDING COFACTOR C, PO...		Potri.005G074700 [exp]	0	1	POR.1,TFCFC
AT5G23450		ATLCBK1	long-chain base (LCB) kinase 1...		Potri.010G255600 [exp]	1.41	0.7862
AT5G63840		PSL5, RSW3	RADIAL SWELLING 3, PRIORITY IN...		Potri.007G100000 [exp]	5.47	0.7737
AT2G43160			ENTH/VHS family protein (.1.2....		Potri.002G231100 [exp]	5.91	0.7922
AT3G58050			unknown protein		Potri.016G060200 [exp]	6.32	0.7575
AT1G66810	C3HZnF	AtC3H14	Zinc finger C-x8-C-x5-C-x3-H t...		Potri.005G176900 [exp]	6.70	0.7385
AT1G18260		HRD3A, EBS5	EMS-mutagenized bri1 suppresso...		Potri.012G046300 [exp]	11.48	0.6851
AT3G24515		UBC37	ubiquitin-conjugating enzyme 3...		Potri.006G157600 [exp]	11.61	0.7448
AT4G10750			Phosphoenolpyruvate carboxylas...		Potri.001G084900 [exp]	13.03	0.6561
AT2G38670		PECT1	phosphorylethanolamine cytidyl...		Potri.006G113900 [exp]	15.49	0.6708
AT2G19400			AGC (cAMP-dependent, cGMP-depe...		Potri.006G146900 [exp]	21.42	0.7028

Compare expression of checked genes

Potri.005G074700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.