Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-UBP3.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G39910 679 / 0 ATUBP3 ubiquitin-specific protease 3 (.1) AT2G22310 674 / 0 ATUBP4 ubiquitin-specific protease 4 (.1.2) AT4G24560 134 / 3e-34 UBP16 ubiquitin-specific protease 16 (.1) AT3G14400 131 / 2e-33 UBP25 ubiquitin-specific protease 25 (.1) AT5G57990 128 / 4e-32 UBP23 ubiquitin-specific protease 23 (.1) AT5G65450 127 / 5e-32 UBP17 ubiquitin-specific protease 17 (.1) AT4G31670 123 / 8e-31 UBP18 ubiquitin-specific protease 18 (.1) AT1G17110 122 / 4e-30 UBP15 ubiquitin-specific protease 15 (.1.2) AT2G24640 119 / 8e-30 UBP19 ubiquitin-specific protease 19 (.1.2) AT4G17895 110 / 4e-26 UBP20 ubiquitin-specific protease 20 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G093600 [exp] 756 / 0 AT4G39910 679 / 0.0 ubiquitin-specific protease 3 (.1) Potri.018G107500 [exp] 144 / 8e-38 AT5G57990 580 / 0.0 ubiquitin-specific protease 23 (.1) Potri.006G185200 [exp] 144 / 1e-37 AT5G57990 620 / 0.0 ubiquitin-specific protease 23 (.1) Potri.011G112800 [exp] 128 / 2e-32 AT3G14400 690 / 0.0 ubiquitin-specific protease 25 (.1) Potri.001G378900 [exp] 127 / 9e-32 AT1G17110 848 / 0.0 ubiquitin-specific protease 15 (.1.2) Potri.005G156900 [exp] 126 / 1e-31 AT4G24560 639 / 0.0 ubiquitin-specific protease 16 (.1) Potri.002G104800 [exp] 126 / 2e-31 AT4G24560 551 / 7e-179 ubiquitin-specific protease 16 (.1) Potri.003G092400 [exp] 126 / 2e-31 AT4G17895 358 / 2e-112 ubiquitin-specific protease 20 (.1) Potri.001G394600 [exp] 124 / 4e-31 AT3G14400 653 / 0.0 ubiquitin-specific protease 25 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041705 [exp] 732 / 0 AT4G39910 682 / 0.0 ubiquitin-specific protease 3 (.1) Lus10024043 [exp] 732 / 0 AT4G39910 682 / 0.0 ubiquitin-specific protease 3 (.1) Lus10014333 [exp] 700 / 0 AT4G39910 643 / 0.0 ubiquitin-specific protease 3 (.1) Lus10026041 [exp] 528 / 0 AT4G39910 481 / 8e-172 ubiquitin-specific protease 3 (.1) Lus10036607 [exp] 136 / 7e-35 AT5G57990 536 / 5e-178 ubiquitin-specific protease 23 (.1) Lus10035825 [exp] 135 / 1e-34 AT5G57990 537 / 3e-178 ubiquitin-specific protease 23 (.1) Lus10009273 [exp] 134 / 5e-34 AT4G24560 585 / 0.0 ubiquitin-specific protease 16 (.1) Lus10043127 [exp] 125 / 2e-31 AT5G46740 362 / 2e-115 ubiquitin-specific protease 21 (.1) Lus10032623 [exp] 126 / 3e-31 AT5G46740 366 / 1e-110 ubiquitin-specific protease 21 (.1) Lus10013726 [exp] 122 / 2e-30 AT3G14400 641 / 0.0 ubiquitin-specific protease 25 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0125 [poplar] [flax] Peptidase_CA PF00443 [poplar] [flax] UCH Ubiquitin carboxyl-terminal hydrolase
Representative CDS sequence Show only first row Show all	>Potri.005G074900.1 pacid=42802616 polypeptide=Potri.005G074900.1.p locus=Potri.005G074900 ID=Potri.005G074900.1.v4.1 annot-version=v4.1 ATGGGCGCAGCAGGTTCTAAACTCGAGAAAGCTTTAGGCGACCAGTTTCCTGAAGGCGAACGATACTTTGGCCTCGAGAATTTCGGCAACACTTGTTACT GTAATAGCGTTTTACAGGCGCTTTACTTCTGTGTACCATTTCGAGAACACTTGTTAGAATATTATGGTAACGGTAAAAGTATTGGGGACGCAGAAGAGAA TCTCTTGACTTGCTTGGCAGATCTATTTACTCAGATAAGTTCACAGAAGAAGAAAACAGGTGTCATTGCTCCAAAGCGTTTCGTACAGAGATTGAAAAAA CAAAATGAGCTTTTCCGAAGCTATATGCACCAGGATGCTCATGAGTTTTTGAATTTTTTGCTAAATGAACTGGTTGACATTCTGGAGAAAGAGGCCCAAG CTGTAAAAAGTGATCCTGAAACTTCTTCCCCACCTGAAAAAATTGCAAATGGACCAAAACATGCTCAGGCAAATGGTGTTTCAAAAGAGCCTTTGGTTAC TTGGGTGCACAAAAATTTTCAGGGAATACTTACCAACGAGACAAGGTGCTTGCAATGTGAGACTGTGACAGCAAGAGATGAAACGTTTTTTGACTTGAGC CTTGATATTGAACAAAACAGTTCCATTACAAGCTGCTTGAAGAATTTTAGTTCCACAGAGACGTTGAATGCAGAGGATAAGTTTTTCTGTGACAAGTGCT GCAGTTTGCAAGAAGCCCAAAAGAGGATGAAGATAAAGAAGCCTCCTCACATCTTGGTCATCCATCTGAAGAGGTTTAAATATATTGAGCAGCTTGGTCG GTACAAAAAGCTGTCTTACAGAGTTGTCTTCCCACTTGAGCTGAAGTTGAGCAATACCGTGGAAGACGCAGATATTGAATACTCCCTATTTGCCGTTGTA GTCCATGTGGGAAGTGGACCTAATCATGGGCACTATGTGAGCCTTGTGAAAAGCCACAACCACTGGTTATTTTTTGATGATGAAAATGTCGAGATGATTG ATGAGTCTGCTGTGCAGACATTTTTTGGGTCAGCGCAGGAATATTCAAGTAATACGGATCATGGGTATATCTTATTTTATGAGAGCATTGGTGCTAGTAA CAACAAGAGTTGA
AA sequence Show only first row Show all	>Potri.005G074900.1 pacid=42802616 polypeptide=Potri.005G074900.1.p locus=Potri.005G074900 ID=Potri.005G074900.1.v4.1 annot-version=v4.1 MGAAGSKLEKALGDQFPEGERYFGLENFGNTCYCNSVLQALYFCVPFREHLLEYYGNGKSIGDAEENLLTCLADLFTQISSQKKKTGVIAPKRFVQRLKK QNELFRSYMHQDAHEFLNFLLNELVDILEKEAQAVKSDPETSSPPEKIANGPKHAQANGVSKEPLVTWVHKNFQGILTNETRCLQCETVTARDETFFDLS LDIEQNSSITSCLKNFSSTETLNAEDKFFCDKCCSLQEAQKRMKIKKPPHILVIHLKRFKYIEQLGRYKKLSYRVVFPLELKLSNTVEDADIEYSLFAVV VHVGSGPNHGHYVSLVKSHNHWLFFDDENVEMIDESAVQTFFGSAQEYSSNTDHGYILFYESIGASNNKS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G39910		ATUBP3	ubiquitin-specific protease 3 ...		Potri.005G074900 [exp]	0	1	Pt-UBP3.2
AT4G13270			Late embryogenesis abundant (L...		Potri.006G159400 [exp]	2.00	0.7865
AT5G20660			Zn-dependent exopeptidases sup...		Potri.008G039400 [exp]	11.48	0.6908
AT5G40490			RNA-binding (RRM/RBD/RNP motif...		Potri.001G344900 [exp]	19.26	0.7315
AT4G04950		AtGRXS17	Arabidopsis thaliana monothiol...		Potri.004G042200 [exp]	29.59	0.7494
AT2G14740		VSR2;2, BP80-2;...	VACUOLAR SORTING RECEPTOR 3, V...		Potri.009G088900 [exp]	32.49	0.7445	VSR.1
AT2G16710			Iron-sulphur cluster biosynthe...		Potri.010G238800 [exp]	37.30	0.6685
AT1G66345			Pentatricopeptide repeat (PPR)...		Potri.004G090800 [exp]	37.54	0.6361
AT5G26160			unknown protein		Potri.006G224200 [exp]	43.81	0.6911
AT5G40190			RNA ligase/cyclic nucleotide p...		Potri.017G073800 [exp]	72.67	0.7071
AT3G13224			RNA-binding (RRM/RBD/RNP motif...		Potri.001G370300 [exp]	73.62	0.7055

Compare expression of checked genes

Potri.005G074900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.