Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G61730 75 / 9e-15 GeBP DNA-binding storekeeper protein-related transcriptional regulator (.1) AT4G00390 72 / 6e-14 GeBP DNA-binding storekeeper protein-related transcriptional regulator (.1) AT3G04930 62 / 1e-10 GeBP DNA-binding storekeeper protein-related transcriptional regulator (.1.2) AT1G11510 62 / 2e-10 GeBP DNA-binding storekeeper protein-related transcriptional regulator (.1) AT5G28040 62 / 2e-10 GeBP DNA-binding storekeeper protein-related transcriptional regulator (.1) AT4G00238 61 / 4e-10 GeBP DNA-binding storekeeper protein-related transcriptional regulator (.1) AT4G00250 60 / 6e-10 GeBP DNA-binding storekeeper protein-related transcriptional regulator (.1) AT1G44810 59 / 1e-09 GeBP DNA-binding storekeeper protein-related transcriptional regulator (.1) AT4G00610 57 / 4e-09 GeBP DNA-binding storekeeper protein-related transcriptional regulator (.1) AT4G01260 55 / 3e-08 GeBP DNA-binding storekeeper protein-related transcriptional regulator (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G119800 [exp] 291 / 8e-95 AT1G61730 101 / 3e-23 DNA-binding storekeeper protein-related transcriptional regulator (.1) Potri.001G293900 [exp] 72 / 8e-14 AT4G25210 142 / 9e-39 DNA-binding storekeeper protein-related transcriptional regulator (.1) Potri.009G088400 [exp] 71 / 3e-13 AT4G25210 133 / 2e-35 DNA-binding storekeeper protein-related transcriptional regulator (.1) Potri.001G261700 [exp] 59 / 1e-09 AT5G28040 239 / 9e-75 DNA-binding storekeeper protein-related transcriptional regulator (.1) Potri.009G056400 [exp] 54 / 7e-08 AT5G28040 229 / 3e-71 DNA-binding storekeeper protein-related transcriptional regulator (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018859 [exp] 61 / 3e-10 AT4G00390 115 / 9e-30 DNA-binding storekeeper protein-related transcriptional regulator (.1) Lus10000940 [exp] 59 / 3e-09 AT5G28040 272 / 2e-87 DNA-binding storekeeper protein-related transcriptional regulator (.1) Lus10028550 [exp] 58 / 3e-09 AT4G00390 122 / 1e-31 DNA-binding storekeeper protein-related transcriptional regulator (.1) Lus10002794 [exp] 56 / 1e-08 AT4G01260 96 / 4e-23 DNA-binding storekeeper protein-related transcriptional regulator (.1) Lus10015944 [exp] 56 / 2e-08 AT5G28040 264 / 2e-84 DNA-binding storekeeper protein-related transcriptional regulator (.1) Lus10005506 [exp] 54 / 5e-08 AT4G00390 108 / 9e-27 DNA-binding storekeeper protein-related transcriptional regulator (.1) Lus10019007 [exp] 53 / 1e-07 AT5G28040 256 / 1e-81 DNA-binding storekeeper protein-related transcriptional regulator (.1) Lus10004772 [exp] 50 / 1e-06 AT4G01260 95 / 1e-21 DNA-binding storekeeper protein-related transcriptional regulator (.1) Lus10000807 [exp] 47 / 1e-05 AT4G01260 79 / 1e-16 DNA-binding storekeeper protein-related transcriptional regulator (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [poplar] [flax] HTH PF04504 [poplar] [flax] DUF573 Protein of unknown function, DUF573
Representative CDS sequence Show only first row Show all	>Potri.005G075000.2 pacid=42804754 polypeptide=Potri.005G075000.2.p locus=Potri.005G075000 ID=Potri.005G075000.2.v4.1 annot-version=v4.1 ATGATTGAGTTCCAAAATGAAAAGGGGAAAAACTCTCCTGCAGATACTGGTGATTTTTATGGATTTGTGAAGGAATCACTCTGTTTTAATGCCTCCAATA ATCAGTTTGCTAATAAAATCAGGATGTTGAAGAAGAAGTATTTTACTGATGTGGAGAAGAATGAGAGTGGGAAATATGAGACTTTTAGTAAACCGCATGA TTTGGAGTGCGTAGAGCTTGCAAAAAAAATATGGGGTGCTGGTGGTATTGTCGTGGGAAATGAGAGTAATGCTAGTAAAAACAGTGGGAAAAATGTTAGT GGTGGTGGACGAGGGATTATTCTGGCGTTGGCGAAATTGGGGAGTGGGGAAGTGAATGGGAAGGGAAAGGAGGCGAGTGTGAAGAGGGGGAAGAGGGGTT CGAGTGAGGAAGTGAGCGGAGAAGGAAAGCAAGGGAATTTGAAGAAGCAAAAGCGGGTTTTGAGTGAGGAAGGCGATGGGGGAGAGGAGGGGAATGTGAA GAAGGGGAAGAGGGGTTTGAGTGAGGAAGCTGATGGAGAAGGGAAGGGAAATGATGGAAAAAAGGAGAGGGGGAAGAGGGTTTTGAGCGAGGAAGTCAAT GGAGAAAGGAAGGGAAAGGGTGGAAAAAAGGAGAAGCAGGCTGCTAACAACGAGCTGAGTGGAGGAGAGGATGCGAATGTGAAGAAGCAAAAGAGGGTCG TGAATGGAGAATGGAAGGAATCAAGTATGAAGAAGCAAAAGGCAGTGGAAAATGAGGAAGTGGAGGGAGGTGAGGGGAGTGAGGATTTGTGGGATAAGTA TCCGTATTTGCGTTCATCGTTACTGTCTGAAGATTTGCCTGAGGATGTGAAGGAGAGAGCAATGATGATGCTGGGGAAGGTTCCAGAGGAAAAGTTGGTG GAGTTGGAAAGGGAGTGGAGGAGTTTGATGAACGCTAAGTTGGAGTTTTTCATGATGGAAAATGATTTGATTGCAAAACAGATGAAGCTAGCTTTAGAAG CTTTAAAGTCTCAAGATTATTAG
AA sequence Show only first row Show all	>Potri.005G075000.2 pacid=42804754 polypeptide=Potri.005G075000.2.p locus=Potri.005G075000 ID=Potri.005G075000.2.v4.1 annot-version=v4.1 MIEFQNEKGKNSPADTGDFYGFVKESLCFNASNNQFANKIRMLKKKYFTDVEKNESGKYETFSKPHDLECVELAKKIWGAGGIVVGNESNASKNSGKNVS GGGRGIILALAKLGSGEVNGKGKEASVKRGKRGSSEEVSGEGKQGNLKKQKRVLSEEGDGGEEGNVKKGKRGLSEEADGEGKGNDGKKERGKRVLSEEVN GERKGKGGKKEKQAANNELSGGEDANVKKQKRVVNGEWKESSMKKQKAVENEEVEGGEGSEDLWDKYPYLRSSLLSEDLPEDVKERAMMMLGKVPEEKLV ELEREWRSLMNAKLEFFMMENDLIAKQMKLALEALKSQDY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G61730	GeBP		DNA-binding storekeeper protei...		Potri.005G075000 [exp]	0	1
AT3G05670			RING/U-box protein (.1)		Potri.013G011400 [exp]	4.24	0.9090
AT3G26560			ATP-dependent RNA helicase, pu...		Potri.015G024400 [exp]	5.47	0.9030
AT1G67230		CRWN1, LINC1	CROWDED NUCLEI 1, little nucle...		Potri.017G111400 [exp]	6.70	0.8967
AT5G47680		AtTRM, TRM10	tRNA modification 10, unknown ...		Potri.006G004900 [exp]	9.00	0.8518
AT3G24080			KRR1 family protein (.1.2)		Potri.001G125200 [exp]	9.16	0.8813
AT3G51650			unknown protein		Potri.006G107500 [exp]	9.38	0.8961
AT5G53440			unknown protein		Potri.015G014800 [exp]	9.38	0.8883
AT3G54980			Pentatricopeptide repeat (PPR)...		Potri.006G250700 [exp]	11.91	0.7997
AT1G49520			SWIB complex BAF60b domain-con...		Potri.004G145200 [exp]	12.96	0.8889
AT2G16485			nucleic acid binding;zinc ion ...		Potri.004G161700 [exp]	14.83	0.8833

Compare expression of checked genes

Potri.005G075000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.