Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G22300 976 / 0 CAMTA SR1, CAMTA3 CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR 3, signal responsive 1 (.1.2) AT5G64220 840 / 0 CAMTA Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains (.1.2) AT5G09410 794 / 0 CAMTA CAMTA1, EICBP.B calmodulin-binding transcription activator 1, ethylene induced calmodulin binding protein (.1.2.3) AT1G67310 326 / 4e-95 CAMTA Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains (.1) AT3G16940 275 / 3e-78 CAMTA calmodulin binding;transcription regulators (.1) AT4G16150 273 / 7e-77 CAMTA calmodulin binding;transcription regulators (.1) AT4G35450 52 / 1e-06 AKR2A, AFT, AKR2 ankyrin repeat-containing protein 2 (.1.2.3.4.5) AT2G17390 47 / 7e-05 AKR2B ankyrin repeat-containing 2B (.1) AT2G47450 44 / 0.0004 CPSRP43, CAO CHLOROPLAST SIGNAL RECOGNITION PARTICLE 43, CHAOS, chloroplast signal recognition particle component (CAO) (.1) AT2G03430 43 / 0.0006 Ankyrin repeat family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G093400 [exp] 1806 / 0 AT2G22300 991 / 0.0 CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR 3, signal responsive 1 (.1.2) Potri.010G153100 [exp] 487 / 7e-155 AT5G64220 676 / 0.0 Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains (.1.2) Potri.001G057800 [exp] 346 / 2e-102 AT1G67310 832 / 0.0 Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains (.1) Potri.003G170600 [exp] 337 / 5e-99 AT1G67310 856 / 0.0 Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains (.1) Potri.008G107900 [exp] 292 / 2e-83 AT4G16150 1026 / 0.0 calmodulin binding;transcription regulators (.1) Potri.010G141700 [exp] 284 / 9e-81 AT4G16150 1038 / 0.0 calmodulin binding;transcription regulators (.1) Potri.008G099733 [exp] 99 / 8e-25 AT5G64220 97 / 1e-25 Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains (.1.2) Potri.004G210000 [exp] 55 / 2e-07 AT2G17390 418 / 1e-146 ankyrin repeat-containing 2B (.1) Potri.004G210100 [exp] 55 / 2e-07 AT2G17390 430 / 3e-151 ankyrin repeat-containing 2B (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024044 [exp] 868 / 0 AT2G22300 822 / 0.0 CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR 3, signal responsive 1 (.1.2) Lus10003405 [exp] 847 / 0 AT5G64220 1028 / 0.0 Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains (.1.2) Lus10041704 [exp] 757 / 0 AT2G22300 912 / 0.0 CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR 3, signal responsive 1 (.1.2) Lus10036162 [exp] 652 / 0 AT5G64220 818 / 0.0 Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains (.1.2) Lus10003119 [exp] 373 / 4e-113 AT1G67310 640 / 0.0 Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains (.1) Lus10011352 [exp] 367 / 2e-109 AT1G67310 637 / 0.0 Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains (.1) Lus10037738 [exp] 290 / 1e-82 AT4G16150 1033 / 0.0 calmodulin binding;transcription regulators (.1) Lus10016873 [exp] 287 / 7e-82 AT3G16940 929 / 0.0 calmodulin binding;transcription regulators (.1) Lus10036455 [exp] 261 / 1e-72 AT4G16150 845 / 0.0 calmodulin binding;transcription regulators (.1) Lus10041126 [exp] 145 / 4e-35 AT4G16150 430 / 1e-137 calmodulin binding;transcription regulators (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0220 [poplar] [flax] EF_hand PF00612 [poplar] [flax] IQ IQ calmodulin-binding motif CL0159 [poplar] [flax] E-set PF01833 [poplar] [flax] TIG IPT/TIG domain CL0159 [poplar] [flax] PF03859 [poplar] [flax] CG-1 CG-1 domain CL0465 [poplar] [flax] Ank PF13637 [poplar] [flax] Ank_4 Ankyrin repeats (many copies)
Representative CDS sequence Show only first row Show all	>Potri.005G075100.1 pacid=42804639 polypeptide=Potri.005G075100.1.p locus=Potri.005G075100 ID=Potri.005G075100.1.v4.1 annot-version=v4.1 ATGGCTGACTCTAGACGTTACCCTCTTGGTAACCAGCTAGATATTCAGCAGATACTGGTAGAAGCACAGAATCGATGGCTACGCCCTGCCGAAATAGTTG AAATTCTTAGCAATTATCAGAGATTTCGTATTGCCCCAGAACCTGCACATATGCCTCCAAGTGGTTCATTGTTCCTTTTTGATCGCAAAGTGCTCAGATA CTTCAGAAAAGATGGCCATAACTGGAGAAAGAAAAAAGATGGGAAAACAGTGAAAGAAGCACACGAGAGGCTTAAGTCTGGAAGCGTTGATGTGCTGCAT TGTTATTATGCACATGGAGAAGACAATGAAAATTTTCAAAGGCGCAGTTATTGGATGCTTGAAGAGGAACTTTCACACATTGTACTTGTCCATTATCGGG AAGTAAAGGGAACCAGGACAAATTTTAACCGCATTAAAGAGTATGAAGAGCCTATACCTTATTCCCAAGAAACCAAAGACATGATGCCGAATTCAGAGAT GGATACTTCTGTTTCTTCCAGTTTCCGCTCTAATGGTTACCAGGTACCCACAGGAACGACAGATTCGACAAGCATGAATAGCGCTCTGGCATCAGAATAT GAAGATGCTGAATCAGGATATAATAACCAAGCCAGTTCCAGATTTAACTCTTTTCTCGAAGTGCAAAGGCCAGCAATGGAGAAAATGGATACAGGCACAT CTATTCCTTATGATCACATGCTGTTTTCAAGTGGTTATCAAGGAAAAATGCCAGCTGTTCCTGTGATGGAATTTATCTCACCTGCCCAAGTGGATACAGC TAAAGACACTATTGGTACTGAACCAGCATCCGAGCCCCAGAAAGTCTTTGACTTACCATCATGGGAGGATGTATTAGAAAATTGTTCTCGTGGAATTGAA TCTGTGCCTTTCCAGACAACTTTGCTGTCACAAGTGGATACGGTGGGAGTCATCCCTAAACAAGAAGATATACTGGAGAAGTTTCTTGCCAATAGCTTTG ATAAAAGGCAGGGTATGGTGGGAGTCATCCCTAAGCAAGAAGATATACTGGAGAAGTTTCTTACCAATAGCTTTGATAGAAGTCAGGATATTGGGAGTCA CCTACTTGATCAAGAAGCATGGCAGACTATCGAGGGTGGGTATTCGCATCGGCCAAAGTGGTCCTTGGATCAAAAGTTGCATCTGGACTCGGATCTCACT GCTAGGTTTCATGATCAACAACTTGATAGTGGCAACTTTATCAATACTTTTGAACCTTTCTGTGCACAGGAAAATGATAATCATATCCAAAATGACCTTC AAATACAGCCTGCAAATTCAGATCATGGTATGACCCTAGATGAGAAATCCATCTACTCTACATCTATGAAACAGCATATTTTGGATGATTCAAGGACAGA AGGTTTGAAGAAGCTCGATAGTTTCACCCGATGGATGAGCAAAGAACTTGAAGATGTAGATCAGCCACATTTGCAATCCAGTTCTGGGACATACTGGATT TCGGCTGAAAGTGAAAATGTGGTTGATGCGGACAATCCCTCACATGGACACCTGGACACATATACGCTTGGTCCATCTCTCTCCCAGGACCAACTCTTTA GCATTATTGATTTCTCGCCCAACTGGGCATATGCAGGCACAGAGATCAAGATCCTAGTCATGGGAAGATTCTTGAAGAGCCGAGAAGAAGCAGAAAACTT TAAATGGTCAATTATGTTTGGAGAAGTTGAAGTTCCAGCAGAGACTATAGCTGATGGTATTCTTCGTTGCACTACTCCTTCGCATAAGGCTGGAAGGGTT CCTTTTTATGTTACATGTTCGAATAGGGTAGCATGTAGTGAAGTGCGTGAATTTGAATATCGACTTAGCCATGTCCAAGATATTACCTATAACTATATTA ACATTGCTACTGAAGATCTTCATATGCGATTAGCAAAACTGTTGTCTCTGAGCTCTGCCTTCCCTTCAAAATATGACTCCAGTGATGTTGATGAGATTTC CCAATTGAGCAATAAAATCAGTTCATTGCTGAAAGAGGGCAATGAAACATGGGACCAGATGTTAAAGCTTACTTCACTGGAGGGATTTTCCTCAGAAAAA CTAAAGGATCAGCTTCTTCAAAAGGCACTCAAGGAACAGTTACATGAATGGCTTTTGCAGAAGGTAGCTGAAGGCGGAAAAGGCCCTAGTGTATTAGATG AGGGTGGCCAAGGGGTGCTACATTTTGCAGCTGCTCTTGGCTATGAATGGGCCCTGGAACCTACAATAGTTGCTGGTGTAAGTGTCAATTTCCGCGATGT TAATGGATGGACTGCACTTCATTGGGCAGCATCTTATGGCAGAGAGCGAACAGTTGCTTCCCTAATCCATCTCGGCGCTGCTCCTGGAGCATTAACAGAT CCAACTCCCAAATATCCCACAGGCAGAACACCTGCGGACTTAGCTTCTGCTAATGGACACAAAGGGATTTCCGGCTTTCTTGCTGAATCTGCTTTGAGTG CCCACCTATCTTCTCTGAATTTGGAAAAGCAGGATGGTGATGCTGCTGAAAGTTCTGGAATACCAGCATCACTGACAGTTTCAGACTGTAATGAAACTCC CGTCAAAGATGCTGACATACCAATTGGACTGTCCCTGAAGGATTCATTAGCTGCTGTTTGTAATGCTACTCAAGCTGCTGCTCGTATTCATCAAGTTTTC AGAGTTCAGTCCTTCCAAAAGAAGCAGTTAAAAGAGTACGGTGATGATAAATTTGGAATGTCACACGAGCGTGCTCTTTCGCTTATTGCAGTCAAGTCAC AAAAGGCAGGACAATATGATGAGCCAGTTCATGCAGCAATACGAATTCAGAACAAGTTCCGCGGTTGGAAGGGTAGAAAAGAATTTTTGATAATTCGGCA GCGAATTGTTAAAATTCAGGCCCATGTACGAGGCCACCAGGTCAGGAAAAACTATAGGAAGATAATCTGGTCTGTTGGCATTTTGGATAAAATAATCTTG CGTTGGAGACGAAAAGGAAGTGGTTTGCGTGGCTTCAAATCTGAAGCACTTACTGAGGGTTCCAGCATGCAAGTTGTATCTACAAAGGATGACGATGATG ATTTCCTTAAAGAAGGCAGAAAGCAAACAGAAGAAAGATCACAAATAGCCCTTGCAAGGGTGAAATCCATGCATCAGCATCCGGAGGCAAGAGAACAGTA TCACAGGCTGCGCAATGTTGTTGCTGAGATCCAAGAGACCAAGGCTATGTACGAATGGGCAAACAATTCAGAAGCGATGGTCGAGTTTGATGACCTGATC AATCTCGAAACGTTATGGGACGGTGACACTTTCTTGCCTACAGATTCTTGA
AA sequence Show only first row Show all	>Potri.005G075100.1 pacid=42804639 polypeptide=Potri.005G075100.1.p locus=Potri.005G075100 ID=Potri.005G075100.1.v4.1 annot-version=v4.1 MADSRRYPLGNQLDIQQILVEAQNRWLRPAEIVEILSNYQRFRIAPEPAHMPPSGSLFLFDRKVLRYFRKDGHNWRKKKDGKTVKEAHERLKSGSVDVLH CYYAHGEDNENFQRRSYWMLEEELSHIVLVHYREVKGTRTNFNRIKEYEEPIPYSQETKDMMPNSEMDTSVSSSFRSNGYQVPTGTTDSTSMNSALASEY EDAESGYNNQASSRFNSFLEVQRPAMEKMDTGTSIPYDHMLFSSGYQGKMPAVPVMEFISPAQVDTAKDTIGTEPASEPQKVFDLPSWEDVLENCSRGIE SVPFQTTLLSQVDTVGVIPKQEDILEKFLANSFDKRQGMVGVIPKQEDILEKFLTNSFDRSQDIGSHLLDQEAWQTIEGGYSHRPKWSLDQKLHLDSDLT ARFHDQQLDSGNFINTFEPFCAQENDNHIQNDLQIQPANSDHGMTLDEKSIYSTSMKQHILDDSRTEGLKKLDSFTRWMSKELEDVDQPHLQSSSGTYWI SAESENVVDADNPSHGHLDTYTLGPSLSQDQLFSIIDFSPNWAYAGTEIKILVMGRFLKSREEAENFKWSIMFGEVEVPAETIADGILRCTTPSHKAGRV PFYVTCSNRVACSEVREFEYRLSHVQDITYNYINIATEDLHMRLAKLLSLSSAFPSKYDSSDVDEISQLSNKISSLLKEGNETWDQMLKLTSLEGFSSEK LKDQLLQKALKEQLHEWLLQKVAEGGKGPSVLDEGGQGVLHFAAALGYEWALEPTIVAGVSVNFRDVNGWTALHWAASYGRERTVASLIHLGAAPGALTD PTPKYPTGRTPADLASANGHKGISGFLAESALSAHLSSLNLEKQDGDAAESSGIPASLTVSDCNETPVKDADIPIGLSLKDSLAAVCNATQAAARIHQVF RVQSFQKKQLKEYGDDKFGMSHERALSLIAVKSQKAGQYDEPVHAAIRIQNKFRGWKGRKEFLIIRQRIVKIQAHVRGHQVRKNYRKIIWSVGILDKIIL RWRRKGSGLRGFKSEALTEGSSMQVVSTKDDDDDFLKEGRKQTEERSQIALARVKSMHQHPEAREQYHRLRNVVAEIQETKAMYEWANNSEAMVEFDDLI NLETLWDGDTFLPTDS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G22300	CAMTA	SR1, CAMTA3	CALMODULIN-BINDING TRANSCRIPTI...		Potri.005G075100 [exp]	0	1
AT2G48010		RKF3	receptor-like kinase in in flo...		Potri.014G136466 [exp]	1.41	0.9349
AT2G48010		RKF3	receptor-like kinase in in flo...		Potri.014G136400 [exp]	2.00	0.9313
AT1G03370			C2 calcium/lipid-binding and G...		Potri.006G003200 [exp]	2.44	0.9230
AT1G61140		EDA16	embryo sac development arrest ...		Potri.011G046400 [exp]	3.87	0.8794
AT1G07530	GRAS	SCL14, ATGRAS2	GRAS \(GAI, RGA, SCR\) 2, ARAB...		Potri.001G241800 [exp]	3.87	0.9030
AT4G04720		CPK21	calcium-dependent protein kina...		Potri.011G003400 [exp]	4.24	0.8966
AT2G35610		XEG113	xyloglucanase 113 (.1)		Potri.004G235800 [exp]	4.24	0.8887
AT1G34190	NAC	ANAC017	NAC domain containing protein ...		Potri.002G061300 [exp]	4.47	0.8886
AT4G28400			Protein phosphatase 2C family ...		Potri.018G150800 [exp]	4.47	0.9197
AT4G21390		B120	S-locus lectin protein kinase ...		Potri.004G027800 [exp]	7.87	0.8395

Compare expression of checked genes

Potri.005G075100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.