Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G10260 400 / 2e-144 AtRABH1e RAB GTPase homolog H1E (.1) AT2G22290 394 / 8e-142 ATRAB6, ATRAB-H1D, AtRABH1d ARABIDOPSIS RAB GTPASE HOMOLOG 6, ARABIDOPSIS RAB GTPASE HOMOLOG H1D, RAB GTPase homolog H1D (.1) AT2G44610 380 / 1e-136 RAB6, AtRABH1b, AtRab6A Ras-related small GTP-binding family protein (.1) AT4G39890 333 / 9e-118 AtRABH1c RAB GTPase homolog H1C (.1) AT5G64990 321 / 4e-113 AtRABH1a RAB GTPase homolog H1A (.1.2) AT4G19640 159 / 3e-49 ATRAB-F2B, ARA7, Ara-7, AtRABF2b, AtRab5B ARABIDOPSIS RAB GTPASE HOMOLOG F2B, Ras-related small GTP-binding family protein (.1) AT5G45130 158 / 6e-49 ATRAB-F2A, RHA1, AtRab5A, AtRABF2a ARABIDOPSIS RAB HOMOLOG F2A, RAB homolog 1 (.1) AT3G54840 157 / 1e-48 ARA6, AtRABF1, Ara-6, AtRab5C Ras-related small GTP-binding family protein (.1.2) AT4G17160 152 / 2e-46 AtRab2B, AtRABB1a RAB GTPase homolog B1A (.1) AT4G17170 147 / 3e-44 ATRAB-B1B, AT-RAB2, AtRABB1c, AtRab2A ARABIDOPSIS RAB GTPASE HOMOLOG B1B, RAB GTPase homolog B1C (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G135500 [exp] 382 / 5e-137 AT2G44610 385 / 3e-138 Ras-related small GTP-binding family protein (.1) Potri.003G086700 [exp] 380 / 3e-136 AT2G44610 397 / 4e-143 Ras-related small GTP-binding family protein (.1) Potri.001G147900 [exp] 278 / 6e-96 AT2G44610 298 / 2e-103 Ras-related small GTP-binding family protein (.1) Potri.012G117800 [exp] 161 / 4e-50 AT5G45130 357 / 1e-127 ARABIDOPSIS RAB HOMOLOG F2A, RAB homolog 1 (.1) Potri.010G226300 [exp] 157 / 1e-48 AT3G54840 373 / 7e-134 Ras-related small GTP-binding family protein (.1.2) Potri.008G035800 [exp] 155 / 6e-48 AT3G54840 367 / 3e-131 Ras-related small GTP-binding family protein (.1.2) Potri.015G113000 [exp] 153 / 5e-47 AT5G45130 339 / 2e-120 ARABIDOPSIS RAB HOMOLOG F2A, RAB homolog 1 (.1) Potri.018G079300 [exp] 152 / 2e-46 AT5G45130 273 / 2e-94 ARABIDOPSIS RAB HOMOLOG F2A, RAB homolog 1 (.1) Potri.014G049400 [exp] 145 / 7e-44 AT1G02130 390 / 2e-140 ARABIDOPSIS THALIANA RAB D2A, ARABIDOPSIS THALIANA RESPONSIVE TO ABSCISIC ACID 1B, ARABIDOPSIS RAS 5, RAS 5 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041702 [exp] 420 / 4e-152 AT5G10260 404 / 7e-146 RAB GTPase homolog H1E (.1) Lus10024046 [exp] 421 / 2e-151 AT5G10260 405 / 3e-145 RAB GTPase homolog H1E (.1) Lus10014336 [exp] 419 / 2e-151 AT5G10260 402 / 3e-145 RAB GTPase homolog H1E (.1) Lus10019501 [exp] 379 / 1e-135 AT2G44610 407 / 5e-147 Ras-related small GTP-binding family protein (.1) Lus10043349 [exp] 379 / 1e-135 AT2G44610 407 / 5e-147 Ras-related small GTP-binding family protein (.1) Lus10019502 [exp] 201 / 1e-66 AT2G44610 218 / 5e-74 Ras-related small GTP-binding family protein (.1) Lus10026045 [exp] 186 / 1e-60 AT5G10260 209 / 5e-70 RAB GTPase homolog H1E (.1) Lus10028820 [exp] 162 / 2e-50 AT3G54840 354 / 3e-126 Ras-related small GTP-binding family protein (.1.2) Lus10017462 [exp] 162 / 3e-48 AT3G54840 349 / 1e-121 Ras-related small GTP-binding family protein (.1.2) Lus10034903 [exp] 155 / 2e-47 AT5G45130 258 / 2e-88 ARABIDOPSIS RAB HOMOLOG F2A, RAB homolog 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00025 [poplar] [flax] Arf ADP-ribosylation factor family
Representative CDS sequence Show only first row Show all	>Potri.005G075300.1 pacid=42803460 polypeptide=Potri.005G075300.1.p locus=Potri.005G075300 ID=Potri.005G075300.1.v4.1 annot-version=v4.1 ATGGCAACAGTATCCCCTCTGGCGAAATACAAGCTGGTATTCCTTGGCGATCAATCCGTTGGTAAAACCAGCATTATCACTCGCTTTATGTATGATAAAT TCGACACCACTTACCAGGCTACTATTGGAATTGATTTTTTGTCCAAAACAATGTACCTTGAAGATCGGACCATTCGGTTGCAACTTTGGGATACTGCTGG TCAAGAGAGATTTAGGAGTCTTATACCGAGCTACATCCGGGATTCTTCTGTAGCTGTAATTGTCTATGATGTAGCTAATAGACAATCATTCTTAAACACC TCTAAATGGATTGAGGAGGTACGGACAGAGCGAGGTGGTGATGTCATTGTTGTCCTTGTTGGAAACAAAACCGATCTTGTTGATAAGAGGCAAGTTTCAA TAGAGGAAGGAGACGGCAAGGCTCGTGAATTTGGAGTTATGTTTATAGAAACCAGTGCGAAAGCAGGATTTAATATAAAGCCTCTATTCCGCAAGATTGC TGCTGCCTTGCCAGGGATGGAAACCCTTTCTTCCACAAAACAGGAAGACATGGTTGATGTGAACCTCAAGCCGACTGTCAATTCTTCCCAGGCAGAGCAG CAAGGAGGGGGTTGTGCATGTTAG
AA sequence Show only first row Show all	>Potri.005G075300.1 pacid=42803460 polypeptide=Potri.005G075300.1.p locus=Potri.005G075300 ID=Potri.005G075300.1.v4.1 annot-version=v4.1 MATVSPLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNT SKWIEEVRTERGGDVIVVLVGNKTDLVDKRQVSIEEGDGKAREFGVMFIETSAKAGFNIKPLFRKIAAALPGMETLSSTKQEDMVDVNLKPTVNSSQAEQ QGGGCAC

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G10260		AtRABH1e	RAB GTPase homolog H1E (.1)		Potri.005G075300 [exp]	0	1
AT5G04930		ALA1	aminophospholipid ATPase 1 (.1...		Potri.008G014600 [exp]	2.00	0.9104
AT4G11610		NTRB, ATNTRB	C2 calcium/lipid-binding plant...		Potri.002G158000 [exp]	3.00	0.8796
AT1G34320			Protein of unknown function (D...		Potri.019G001500 [exp]	6.92	0.8861
AT1G64300			Protein kinase family protein ...		Potri.003G137000 [exp]	8.36	0.8610
AT4G33565			RING/U-box superfamily protein...		Potri.017G049300 [exp]	8.94	0.8438
AT4G01250	WRKY	ATWRKY22, WRKY2...	WRKY family transcription fact...		Potri.001G099001 [exp]	9.59	0.8781
AT4G20780		CML42	calmodulin like 42 (.1)		Potri.006G112500 [exp]	9.59	0.8217
AT1G74360			Leucine-rich repeat protein ki...		Potri.015G061600 [exp]	11.74	0.8756
AT3G14470			NB-ARC domain-containing disea...		Potri.009G056200 [exp]	12.24	0.8507
AT3G62150		ABCB21, PGP21	ATP-binding cassette B21, P-gl...		Potri.002G187400 [exp]	14.96	0.8738

Compare expression of checked genes

Potri.005G075300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.