Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G10250 695 / 0 DOT3 DEFECTIVELY ORGANIZED TRIBUTARIES 3, Phototropic-responsive NPH3 family protein (.1) AT1G30440 368 / 1e-118 Phototropic-responsive NPH3 family protein (.1) AT5G03250 351 / 7e-113 Phototropic-responsive NPH3 family protein (.1) AT5G13600 349 / 2e-112 Phototropic-responsive NPH3 family protein (.1) AT5G66560 332 / 1e-104 Phototropic-responsive NPH3 family protein (.1) AT5G67385 323 / 3e-102 Phototropic-responsive NPH3 family protein (.1) AT3G50840 312 / 2e-98 Phototropic-responsive NPH3 family protein (.1) AT3G44820 313 / 9e-98 Phototropic-responsive NPH3 family protein (.1) AT5G48800 311 / 3e-97 Phototropic-responsive NPH3 family protein (.1) AT5G67440 309 / 4e-97 MEL2, NPY3 NAKED PINS IN YUC MUTANTS 3, MAB4/ENP/NPY1-LIKE 2, Phototropic-responsive NPH3 family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G093000 [exp] 1036 / 0 AT5G10250 706 / 0.0 DEFECTIVELY ORGANIZED TRIBUTARIES 3, Phototropic-responsive NPH3 family protein (.1) Potri.017G048200 [exp] 536 / 0 AT5G64330 993 / 0.0 ROOT PHOTOTROPISM 3, NON-PHOTOTROPIC HYPOCOTYL 3, Phototropic-responsive NPH3 family protein (.1.2) Potri.007G112600 [exp] 536 / 0 AT5G64330 989 / 0.0 ROOT PHOTOTROPISM 3, NON-PHOTOTROPIC HYPOCOTYL 3, Phototropic-responsive NPH3 family protein (.1.2) Potri.013G024400 [exp] 379 / 6e-124 AT5G10250 331 / 5e-106 DEFECTIVELY ORGANIZED TRIBUTARIES 3, Phototropic-responsive NPH3 family protein (.1) Potri.001G357100 [exp] 380 / 1e-123 AT1G30440 971 / 0.0 Phototropic-responsive NPH3 family protein (.1) Potri.011G091100 [exp] 374 / 2e-121 AT1G30440 924 / 0.0 Phototropic-responsive NPH3 family protein (.1) Potri.007G053200 [exp] 351 / 7e-113 AT5G67385 807 / 0.0 Phototropic-responsive NPH3 family protein (.1) Potri.016G090400 [exp] 349 / 6e-112 AT5G03250 768 / 0.0 Phototropic-responsive NPH3 family protein (.1) Potri.010G223600 [exp] 344 / 6e-110 AT5G03250 683 / 0.0 Phototropic-responsive NPH3 family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026046 [exp] 831 / 0 AT5G10250 639 / 0.0 DEFECTIVELY ORGANIZED TRIBUTARIES 3, Phototropic-responsive NPH3 family protein (.1) Lus10014337 [exp] 816 / 0 AT5G10250 620 / 0.0 DEFECTIVELY ORGANIZED TRIBUTARIES 3, Phototropic-responsive NPH3 family protein (.1) Lus10023274 [exp] 381 / 8e-124 AT1G30440 910 / 0.0 Phototropic-responsive NPH3 family protein (.1) Lus10038531 [exp] 379 / 4e-123 AT1G30440 915 / 0.0 Phototropic-responsive NPH3 family protein (.1) Lus10013799 [exp] 368 / 1e-118 AT5G03250 672 / 0.0 Phototropic-responsive NPH3 family protein (.1) Lus10009292 [exp] 353 / 2e-113 AT5G03250 670 / 0.0 Phototropic-responsive NPH3 family protein (.1) Lus10015871 [exp] 353 / 2e-113 AT5G03250 666 / 0.0 Phototropic-responsive NPH3 family protein (.1) Lus10019522 [exp] 347 / 8e-111 AT3G44820 781 / 0.0 Phototropic-responsive NPH3 family protein (.1) Lus10033796 [exp] 340 / 3e-108 AT2G14820 735 / 0.0 NAKED PINS IN YUC MUTANTS 2, MAB4/ENP/NPY1-LIKE 3, Phototropic-responsive NPH3 family protein (.1) Lus10026511 [exp] 339 / 9e-108 AT5G03250 665 / 0.0 Phototropic-responsive NPH3 family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0033 [poplar] [flax] POZ PF00651 [poplar] [flax] BTB BTB/POZ domain CL0033 [poplar] [flax] PF03000 [poplar] [flax] NPH3 NPH3 family
Representative CDS sequence Show only first row Show all	>Potri.005G075400.2 pacid=42804461 polypeptide=Potri.005G075400.2.p locus=Potri.005G075400 ID=Potri.005G075400.2.v4.1 annot-version=v4.1 ATGTTCAGGCTCAAAGCAACAATGTCATGCAGCTCCACTGTAACCATGAAGAAGTCCCTTCCACCAGTTCAATCACAGAGCTCAGAGAGCGATTCTGGTG GTGTCGATCAAGTTTACAACCAAAGCATCATAGTTCCTCCCACAGCCATGTCAATAGCCGATGGCTTCGAAAAGAATGATCACTCATGGTTTGTCAATTC CCCAATCCCGACGGATCTATCAATTCAAGTTCAAGACATCACCTTTACTGTTCACAAGTATCCCTTGGTATCAAAAAGTAGCTACATAGGCCGCTTGGAA ATTCAGCCTTCAATTTCAAATTTTGGGTACGAACTCAAGCTTGAAAACTTCCCAGGTGGACCAGAAGCATTTGAAATCATTCTAAAGTTCTGTTATGGTC TTACACTAGACTTAAACCCTAGCAACATTGCTCCACTAAGATGTGCATCAGAATTCCTAGAAATGAGTGAAGAACTTGATGATGGAAATCTCATCTCAAA GACAGAAGCTTTCCTCACATTTGTAGTCCTCTCATCATGGAAAGACACCATAACTGTTCTCAAATCCTGCGAAACTTTATCTCCATGGGCAGAAAATCTC CAGATAGTTAGAAGATGTTGTGACTCAATAGCATGGAAGGCTTCTAGAGACAATTCAACAATAGGAGATACGGTTAATGACGAAGGATGTTGGTTTGATG ATGTGGCTTCCCTTCGAATTGATCATTTCATGAGAATTATAACTGCAATAGGGGCAAGGGGAACAAAACCAGAGATCATAGGTAAATGTATAATGCAATA TGCAGAAAGATGGCTGCCAGGCATGGATGTGGAATTAGAAGGTCCAAGGGGGTATGGATATGGAAAGAATGAACTGCAGTTCAGTATTTTGATTGGAAGG AAGGAAGATGAGGGTATTGAGCATAGCCAGGAGCAAAAATCTATTATTGAAAGCCTAGTAAGCATACTTCCTCCTCAACCAGGAGCTGTCCCATGTAAGT TTTTACTGAAGATGTTGAAAATGGCAATGGTTTACTCTGCATCCCAAGCTTTGATCTCAGAGCTTGAGAAAAGAGTGGGGATGATGTTGGAGAATGCCAA TGTCAATGATCTTTTGATTCCTAATTATAAAAGGGAAGATCAGGGGAAATTTGTGAACTCACTTGAACATCGAACAATGCACGACATAGAAGTAATACAA AGAATCGTTGAATATTTTCTGATGCATGAACAAGAGCAGCAACAACTGCCACAGACAACAGGGAAATCAAGTGTTAGCAAGCTTTTGGACAGTTATCTAA CTGAGGTTGCAAAGGACCCTAATCTCTCCATTACCAAGTTTCAAGTTTTGGCTGAAGCCCTGCCAGAAAAAGCTCGGACATGTGATGACGGTCTTTATGG AGCCATTGACACCTATCTCAAGGCTCATCCTTTGCTCTCTGAGCATGACCGAAAAAGGCTATGCAGAATAATGAACTGTGGGAAGTTATCACTTGATGCG TGCTTGCATGCAGCACAAAATGATAGGTTGCCTCTACGAACAGTTATTCAGGTGTTGTTCTGTGAGCAAATAAAAATAAGGGCAGCAATGCAAGGAAAAG AGGCAGTAGCAAGTGGTAACAGCTCAGAACAAGAAATAACTCAAACATCAACAAAAACTGAGATCACGACCCTAAGAGCAGAACTAGAGAACGTAAAGAC ACAAATGACAGAGCTGCAGAGGGACTATTTTGAACTGCAACATGAATACGGAAAGAAAAACAACAAGCATATGAATAGATCGGCCTGGAATTTTGGTTGG ACAAAGATCAGAACATCAGCTCTTTTCCATAGAAAATCAGAGGGGAATTTAAGTGGACAAGAACATAAGATACCCAATTCACTTGGCCACAAAATGAATT TCAGAAGAAGACTATCCATGTCATGA
AA sequence Show only first row Show all	>Potri.005G075400.2 pacid=42804461 polypeptide=Potri.005G075400.2.p locus=Potri.005G075400 ID=Potri.005G075400.2.v4.1 annot-version=v4.1 MFRLKATMSCSSTVTMKKSLPPVQSQSSESDSGGVDQVYNQSIIVPPTAMSIADGFEKNDHSWFVNSPIPTDLSIQVQDITFTVHKYPLVSKSSYIGRLE IQPSISNFGYELKLENFPGGPEAFEIILKFCYGLTLDLNPSNIAPLRCASEFLEMSEELDDGNLISKTEAFLTFVVLSSWKDTITVLKSCETLSPWAENL QIVRRCCDSIAWKASRDNSTIGDTVNDEGCWFDDVASLRIDHFMRIITAIGARGTKPEIIGKCIMQYAERWLPGMDVELEGPRGYGYGKNELQFSILIGR KEDEGIEHSQEQKSIIESLVSILPPQPGAVPCKFLLKMLKMAMVYSASQALISELEKRVGMMLENANVNDLLIPNYKREDQGKFVNSLEHRTMHDIEVIQ RIVEYFLMHEQEQQQLPQTTGKSSVSKLLDSYLTEVAKDPNLSITKFQVLAEALPEKARTCDDGLYGAIDTYLKAHPLLSEHDRKRLCRIMNCGKLSLDA CLHAAQNDRLPLRTVIQVLFCEQIKIRAAMQGKEAVASGNSSEQEITQTSTKTEITTLRAELENVKTQMTELQRDYFELQHEYGKKNNKHMNRSAWNFGW TKIRTSALFHRKSEGNLSGQEHKIPNSLGHKMNFRRRLSMS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G10250		DOT3	DEFECTIVELY ORGANIZED TRIBUTAR...		Potri.005G075400 [exp]	0	1
AT1G78270		ATUGT85A4	UDP-glucosyl transferase 85A4 ...		Potri.016G020201 [exp]	1.00	0.9845
AT5G50700		HSD1	hydroxysteroid dehydrogenase 1...		Potri.015G099900 [exp]	5.65	0.9632
AT2G26580	YABBY	YAB5	YABBY5, plant-specific transcr...		Potri.018G129800 [exp]	8.06	0.9631
AT3G61930			unknown protein		Potri.014G105000 [exp]	9.48	0.9468
AT5G04590		SIR	sulfite reductase (.1)		Potri.009G052600 [exp]	12.00	0.9618
AT2G45190	YABBY	FIL, YAB1, AFO	YABBY1, FILAMENTOUS FLOWER, AB...		Potri.002G145100 [exp]	12.12	0.9615
AT1G06620			2-oxoglutarate (2OG) and Fe(II...		Potri.008G165400 [exp]	12.48	0.9516
AT3G21780		UGT71B6	UDP-glucosyl transferase 71B6 ...		Potri.016G017300 [exp]	12.84	0.9493
AT1G67090		RBCS1A	ribulose bisphosphate carboxyl...		Potri.017G114600 [exp]	12.96	0.9594
AT3G62820			Plant invertase/pectin methyle...		Potri.014G129400 [exp]	13.03	0.9564

Compare expression of checked genes

Potri.005G075400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.