Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G39880 191 / 8e-63 Ribosomal protein L23/L15e family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G093100 [exp] 138 / 2e-42 AT4G39880 90 / 1e-23 Ribosomal protein L23/L15e family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041700 [exp] 225 / 7e-76 AT4G39880 192 / 3e-63 Ribosomal protein L23/L15e family protein (.1) Lus10024048 [exp] 219 / 8e-74 AT4G39880 188 / 1e-61 Ribosomal protein L23/L15e family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00276 [poplar] [flax] Ribosomal_L23 Ribosomal protein L23
Representative CDS sequence Show only first row Show all	>Potri.005G075500.1 pacid=42804274 polypeptide=Potri.005G075500.1.p locus=Potri.005G075500 ID=Potri.005G075500.1.v4.1 annot-version=v4.1 ATGGCAGGCAGATTGGGAAGAAGAGTAATAAACTTCGCAAACCTCCCCATAAAACTCCTGATGCCTACAACATACACAAATATCTCCGAAATCGCACTAA AAACAATCCCTTCAGCCTCCAAAATCGAAATCAAGCGTGTCCTTGAATCGCTCTACGGCTTCGACGTCGAAAAGGTAAGCACTCTTAACATGGAAGGAAA AAAGAAGAAACGCGGCGGATTCCTCATCGCCAAGCCTGACTATAAAAAAGCATACGTCACGCTTAAAACTCCCCTCTCGATTTCGCCCCATTTATTTCCG ATTAGAGTTATTGAGGAAGAGAGGGCGAAAATGAGTAAGAAGGCACCGGAGAGTAGTTTTGTTGAGGATAATAAGAGTCACTGGCTTCATGAGAAGAAGA AGGAGAGTGGTCGCGGCGGTAGCGGTAGCGGATGGCGTGGTGGTCGCGGCGGTCGTGGTCGTGGTGATGTGGCGGCCGAGAAGGCCAAGTTTCCTTGGAG CAGCATGAGGAGCTCTACTGCTAATTCTAGGTAG
AA sequence Show only first row Show all	>Potri.005G075500.1 pacid=42804274 polypeptide=Potri.005G075500.1.p locus=Potri.005G075500 ID=Potri.005G075500.1.v4.1 annot-version=v4.1 MAGRLGRRVINFANLPIKLLMPTTYTNISEIALKTIPSASKIEIKRVLESLYGFDVEKVSTLNMEGKKKKRGGFLIAKPDYKKAYVTLKTPLSISPHLFP IRVIEEERAKMSKKAPESSFVEDNKSHWLHEKKKESGRGGSGSGWRGGRGGRGRGDVAAEKAKFPWSSMRSSTANSR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G39880			Ribosomal protein L23/L15e fam...		Potri.005G075500 [exp]	0	1
AT3G59650			mitochondrial ribosomal protei...		Potri.013G126200 [exp]	1.41	0.8883
AT1G61570		TIM13	translocase of the inner mitoc...		Potri.011G149800 [exp]	2.82	0.8802	TIM13.2
AT5G52370			unknown protein		Potri.009G040100 [exp]	5.47	0.8275
AT4G17010			unknown protein		Potri.012G038600 [exp]	6.32	0.7808
AT5G40770		ATPHB3	prohibitin 3 (.1)		Potri.001G335700 [exp]	8.94	0.8211	Pt-PHB3.2
AT2G47580		U1A	spliceosomal protein U1A (.1)		Potri.014G127800 [exp]	8.94	0.8115	Pt-U1A.2
AT4G01310			Ribosomal L5P family protein (...		Potri.014G089100 [exp]	10.19	0.7912	RPL5.2
AT1G17880		ATBTF3	basic transcription factor 3 (...		Potri.015G029800 [exp]	14.00	0.8239
AT5G21060			Glyceraldehyde-3-phosphate deh...		Potri.004G196200 [exp]	14.96	0.7911
AT5G64130			cAMP-regulated phosphoprotein ...		Potri.004G111900 [exp]	15.49	0.7397

Compare expression of checked genes

Potri.005G075500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.