Potri.005G075600 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G65000 461 / 2e-164 Nucleotide-sugar transporter family protein (.1.2)
AT4G35335 60 / 6e-10 Nucleotide-sugar transporter family protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.007G092800 589 / 0 AT5G65000 429 / 6e-152 Nucleotide-sugar transporter family protein (.1.2)
Potri.016G113200 58 / 3e-09 AT4G35335 581 / 0.0 Nucleotide-sugar transporter family protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10026182 452 / 1e-160 AT5G65000 446 / 1e-158 Nucleotide-sugar transporter family protein (.1.2)
Lus10042484 351 / 2e-120 AT5G65000 341 / 1e-116 Nucleotide-sugar transporter family protein (.1.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0184 DMT PF16913 PUNUT Purine nucleobase transmembrane transport
Representative CDS sequence
>Potri.005G075600.1 pacid=42804493 polypeptide=Potri.005G075600.1.p locus=Potri.005G075600 ID=Potri.005G075600.1.v4.1 annot-version=v4.1
ATGGCGACGACGAAGCGGAAAGGTGGAGCCTCCGGATCGGAGAGAACGAACCCAAGGGTTTGGCTATACTCCATTTTGCTCACTCTTCAATACGGAGCTC
AGCCTCTCATCTCCAAACGCTTCACCGGACGTGAAGTAATCGTGACTACGTCTGTTTTGACATGTGAGGTAGCTAAGGTTGTATGTGCCCTAATTCTCAT
GGTAAGAGATGGTAGTTTGAAGAAAGTGTTCAGTCAGTGGACTTTGGTTGGGTCGTTGACTGCATCAGGCCTTCCTGCAGCTATCTATGCTCTGCAAAAC
AGCTTGCTGCAGATATCTTACAAGAATCTTGATTCACTCACATTTTCAATATTGAACCAGACAAAAGTATTTTTTACTGCATTCTTTACATACATAATAT
TGAGGCAGAAACAATCAATTCAACAAATCGGGGCTCTGTTCTTGCTGATAATGGCAGCTGTCCTTCTAAGCATCGGTGAGGGCTCTAGCAAAGGCTCTGG
CAGTAGTGATCCTGAGCAAATTTTATTTTATGGGATCATTCCTGTCCTGGTTGCTTCAGTTCTCTCTGGTCTAGCTTCAGCTTTGTGTCAATGGGCTTCT
CAGGTTAAGAAACACTCGTCATACTTGATGACTGTAGAAATGTCAATTGTTGGAAGCTTATGCTTGTTGGCCAGCACCACTAAGTCTCCAGATGGAGAAG
CTATCAGACAGCATGGATACTTTTATGGTTGGACTCCTCTAACAATGATCCCAGTTGTAGCGAATGCTCTAGGTGGAATTCTCGTGGGCCTTGTCACAAG
CTACGCTGGTGGCGTGAGAAAGGGGTTTGTCATCGTTTCTGCACTTCTTGTAACGGCCTTGCTTCAGTTCTTGTTTGAAGGGAAGCCACCTTCGATTTAC
AGTCTTGTGGCCCTTCCACTTGTCATGAGCAGCATTTCAATATATCAGAAATATCCATACCAAGTAAAAAAGAAGGAATCATAG
AA sequence
>Potri.005G075600.1 pacid=42804493 polypeptide=Potri.005G075600.1.p locus=Potri.005G075600 ID=Potri.005G075600.1.v4.1 annot-version=v4.1
MATTKRKGGASGSERTNPRVWLYSILLTLQYGAQPLISKRFTGREVIVTTSVLTCEVAKVVCALILMVRDGSLKKVFSQWTLVGSLTASGLPAAIYALQN
SLLQISYKNLDSLTFSILNQTKVFFTAFFTYIILRQKQSIQQIGALFLLIMAAVLLSIGEGSSKGSGSSDPEQILFYGIIPVLVASVLSGLASALCQWAS
QVKKHSSYLMTVEMSIVGSLCLLASTTKSPDGEAIRQHGYFYGWTPLTMIPVVANALGGILVGLVTSYAGGVRKGFVIVSALLVTALLQFLFEGKPPSIY
SLVALPLVMSSISIYQKYPYQVKKKES

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G65000 Nucleotide-sugar transporter f... Potri.005G075600 0 1
AT2G38670 PECT1 phosphorylethanolamine cytidyl... Potri.018G132700 28.84 0.6826
AT1G16300 GAPCP-2 glyceraldehyde-3-phosphate deh... Potri.010G172400 71.62 0.6102
AT4G04470 PMP22 Peroxisomal membrane 22 kDa (M... Potri.004G008700 75.97 0.6333
AT1G34340 alpha/beta-Hydrolases superfam... Potri.013G115000 76.01 0.6057
AT5G26751 ATSK11 ,SK 11 ARABIDOPSIS THALIANA SHAGGY-RE... Potri.002G190500 96.69 0.6419 Pt-MSK.2
AT4G38430 ATROPGEF1, ROPG... rho guanyl-nucleotide exchange... Potri.005G247100 97.92 0.6459
AT2G14820 MEL3, NPY2 NAKED PINS IN YUC MUTANTS 2, M... Potri.001G295600 98.43 0.6493
AT1G25580 NAC ANAC008, SOG1 SUPPRESSOR OF GAMMA RADIATION ... Potri.008G116600 112.76 0.6459
AT5G65260 RNA-binding (RRM/RBD/RNP motif... Potri.017G051600 151.09 0.6323
AT5G58490 NAD(P)-binding Rossmann-fold s... Potri.009G076300 211.07 0.6162 Pt-CCR.7

Potri.005G075600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.