Plant FIBer expression Database

Potri.005G075800 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G39870 404 / 2e-140 TLD-domain containing nucleolar protein (.1.2)
AT2G05590 221 / 6e-70 TLD-domain containing nucleolar protein (.1.2)
AT5G06260 74 / 4e-14 TLD-domain containing nucleolar protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.007G092700
[exp]
608 / 0 AT4G39870 414 / 3e-144 TLD-domain containing nucleolar protein (.1.2)
Potri.010G065900
[exp]
223 / 5e-70 AT2G05590 286 / 6e-96 TLD-domain containing nucleolar protein (.1.2)
Potri.006G206200
[exp]
80 / 3e-16 AT5G06260 604 / 0.0 TLD-domain containing nucleolar protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10041697
[exp]
494 / 5e-176 AT4G39870 419 / 4e-146 TLD-domain containing nucleolar protein (.1.2)
Lus10024053
[exp]
490 / 8e-167 AT4G39870 416 / 2e-137 TLD-domain containing nucleolar protein (.1.2)
Lus10014476
[exp]
208 / 3e-64 AT2G05590 307 / 4e-104 TLD-domain containing nucleolar protein (.1.2)
Lus10023727
[exp]
196 / 6e-56 AT1G04500 315 / 3e-100 CCT motif family protein (.1)
Lus10021306
[exp]
75 / 1e-14 AT5G06260 574 / 0.0 TLD-domain containing nucleolar protein (.1)
Lus10016984
[exp]
67 / 4e-12 AT5G06260 460 / 5e-161 TLD-domain containing nucleolar protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF07534 TLD TLD
Representative CDS sequence
>Potri.005G075800.3 pacid=42803707 polypeptide=Potri.005G075800.3.p locus=Potri.005G075800 ID=Potri.005G075800.3.v4.1 annot-version=v4.1
ATGGGAAAACAGCAAAAGTCGTTAAGGAGCAAATCAGTCCACTTTGTGTCTGATCTCACCACTGTCATCCTTAACCCTATCTCTGATAAACCCTCCAAGC
ATTCGACTCCTCGTCCTCATCCACTTCCTGAAGATGCCAGTGAGTCAAAAACGAGTCAGCTAGAGTCCATTACTGAAGAGGACACAGGGCATTTAGCTGA
AGAGCCTGATACTTCATCATTCACCGCATTCCTATTCTCTTTGTTAACGTCCTCAGAGTCTGGAAATAATGCAAAATTGGATAAGCAAAATGATAATTCA
GATCAAATGGATGACCAGTTATCTGGGAATGTAGCAAAAGAGAGTGGCACAAAAAAGGGATTGCTTTCAAGGGCCAAGCATTCTCTTGGAGCTATTTACC
AAGCTACTAGAATAGACAGATATCAAAGTCAAGAACACAAGGAAAATTCAGACTTGAAAATTGCTGATGATAATGATGGTGATGCAGTTGAGATAAGAAG
TATGCTGAAACAGAACATGAAAGAGCCTGTTGCTTTGGGAGATATTTCAAACATTTCTGAACCTTCATTGCTTCTTTCAGAGAAAGCAAGGAGCACCCTT
TATGTTTCTCTTCCAGCACTTGTCCAAGGGAGAAAATGGTTATTGCTGTACAGTACATGGAGGCATGGGATATCGCTTTCAACCTTGTATAGAAGGAGCA
TGCTTTGGCCTGGACCTTGTCTGCTGGCTGTTGGAGATCGCAAAGGGGCAGTATTTGGTGGCCTGGTTGAAGCTCCCCTGAGGCCAACCAACAAGAAATA
TCAGGGATCAAATAGTACATTTGTTTTTACAAATACACCTGGCCATCCTGTCATATTCCGTCCCACAGGTGCTAATCGTTATTTCACTTTGTGCTCTACC
GACTTTCTTGCAATTGGTGGAGGTGGCCACTTTGCACTCTACTTGGACAGTGATCTATTAAATGGATCAAGTTCGGTCTCAGAAACGTATGGGAACCCTT
GCCTTGCACACTCTGAAGACTTTGAAGTCAAGGAAGTTGAGCTATGGGGCTTTGTACATGGTTCAAAGTATGAGGAAATACTTGCTTTAAGCAGAACCGA
GGCTCCTGGGATTTGTCGGTTTTGA
AA sequence
>Potri.005G075800.3 pacid=42803707 polypeptide=Potri.005G075800.3.p locus=Potri.005G075800 ID=Potri.005G075800.3.v4.1 annot-version=v4.1
MGKQQKSLRSKSVHFVSDLTTVILNPISDKPSKHSTPRPHPLPEDASESKTSQLESITEEDTGHLAEEPDTSSFTAFLFSLLTSSESGNNAKLDKQNDNS
DQMDDQLSGNVAKESGTKKGLLSRAKHSLGAIYQATRIDRYQSQEHKENSDLKIADDNDGDAVEIRSMLKQNMKEPVALGDISNISEPSLLLSEKARSTL
YVSLPALVQGRKWLLLYSTWRHGISLSTLYRRSMLWPGPCLLAVGDRKGAVFGGLVEAPLRPTNKKYQGSNSTFVFTNTPGHPVIFRPTGANRYFTLCST
DFLAIGGGGHFALYLDSDLLNGSSSVSETYGNPCLAHSEDFEVKEVELWGFVHGSKYEEILALSRTEAPGICRF

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT4G39870 TLD-domain containing nucleola... Potri.005G075800
[exp]
0 1
AT2G25920 unknown protein Potri.002G198400
[exp]
1.00 0.8734
Potri.013G037900
[exp]
2.44 0.8206
AT1G27070 5'-AMP-activated protein kinas... Potri.008G194300
[exp]
6.00 0.7798
AT3G45880 2-oxoglutarate (2OG) and Fe(II... Potri.001G233200
[exp]
9.89 0.7629
AT5G50410 unknown protein Potri.012G097500
[exp]
10.24 0.8025
AT1G63690 ATSPPL2 SIGNAL PEPTIDE PEPTIDASE-LIKE ... Potri.003G128500
[exp]
11.22 0.7682
AT2G38550 Transmembrane proteins 14C (.1... Potri.006G108700
[exp]
12.36 0.7575
AT2G36350 Protein kinase superfamily pro... Potri.004G186300
[exp]
12.44 0.7750
Potri.015G107925
[exp]
13.07 0.7378
AT5G66240 Transducin/WD40 repeat-like su... Potri.005G114600
[exp]
14.69 0.7205

Potri.005G075800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.