Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G39860 354 / 3e-123 unknown protein AT1G78150 264 / 5e-88 unknown protein AT1G35780 254 / 6e-84 unknown protein AT2G22270 212 / 5e-67 unknown protein AT2G22260 45 / 5e-05 oxidoreductase, 2OG-Fe(II) oxygenase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G092400 [exp] 467 / 8e-168 AT4G39860 384 / 4e-135 unknown protein Potri.002G095300 [exp] 337 / 1e-116 AT1G35780 364 / 2e-127 unknown protein Potri.005G165500 [exp] 335 / 8e-116 AT1G35780 357 / 2e-124 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041695 [exp] 383 / 2e-134 AT4G39860 399 / 1e-140 unknown protein Lus10024053 [exp] 380 / 1e-125 AT4G39870 416 / 2e-137 TLD-domain containing nucleolar protein (.1.2) Lus10020921 [exp] 325 / 1e-111 AT1G35780 367 / 1e-128 unknown protein Lus10033456 [exp] 314 / 2e-107 AT1G35780 362 / 1e-126 unknown protein Lus10009931 [exp] 65 / 2e-13 AT1G35780 107 / 2e-30 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF13266 [poplar] [flax] DUF4057 Protein of unknown function (DUF4057)
Representative CDS sequence Show only first row Show all	>Potri.005G076000.1 pacid=42804926 polypeptide=Potri.005G076000.1.p locus=Potri.005G076000 ID=Potri.005G076000.1.v4.1 annot-version=v4.1 ATGGAGAGAAATGCAGCCGTGCGGAAACCACACACTTCCACCGCCGATCTGCTGACGTGGAAGGTGTCTCCTCCTTCTGCCACTCCTCCTTCCGCCTCTT CACACCGCCCTCACCAGCCGTCTGATAATATCAGTAAAGTGCTGTTTGGAGGTCAGGTTTCTCAAGAAGAAGCAGAGAGTCTCATGAAGAAAAAGCCATG TTCAGGATATAAATTAAATGAGATGAGTGGCAGTAGCATATTTAATGGTCAAGATGGTGAATCTGAATCTGGTGGTGCTAATCCTAATAACAGAACCACA GTGCGTGTTTATCAGCAAGCAGTGACTGGAATGAGCCAAATATCATTTAGTTCTGATGAGAGCATCTCCCTTAAGAAGCCTACCTCTATCCCAGAAGTGG CAAAGCAGCGTGAGTTAAGTGGGACAATGCAAAATGATGCGGACATGAAGAGCAAAAGGCAAATATCAAATGCTAAATTCAAGGAGATTAGTGGGCATGA CATTTTTTCCCCTCCTGATGAAATTGTTCCCCGGTCACTGGCTGTTGCACACTCCTTGGAAATTAAAGAAAACAAAGACATCGGGGAACCTGCACCTCGA AACATTCACCCATCTATCAAAGTTTCAAATCCTGCTGGAGGTCAGAGTAATATCCTCTTTGGTGAAGAACCAGTCATGAAGACAGCAAAGAAAATACTCG ACCAGAAGTTTCATGAGCTGACCGGCAATGATATTTTCAAGGGAGATGTCCCTCCTGGATCTGCTGAAAAACCACTAAGCACGGCAAAACTGAAAGAAAT GAGTGGCAGTGACATCTTTGCTGATGGAAAAGCAGCATCCAGAGATTATCTTGGTGGTGTCCGCAAGCCCCCTGGCGGTGAGAGCAGCATTGCGTTAGTA TAA
AA sequence Show only first row Show all	>Potri.005G076000.1 pacid=42804926 polypeptide=Potri.005G076000.1.p locus=Potri.005G076000 ID=Potri.005G076000.1.v4.1 annot-version=v4.1 MERNAAVRKPHTSTADLLTWKVSPPSATPPSASSHRPHQPSDNISKVLFGGQVSQEEAESLMKKKPCSGYKLNEMSGSSIFNGQDGESESGGANPNNRTT VRVYQQAVTGMSQISFSSDESISLKKPTSIPEVAKQRELSGTMQNDADMKSKRQISNAKFKEISGHDIFSPPDEIVPRSLAVAHSLEIKENKDIGEPAPR NIHPSIKVSNPAGGQSNILFGEEPVMKTAKKILDQKFHELTGNDIFKGDVPPGSAEKPLSTAKLKEMSGSDIFADGKAASRDYLGGVRKPPGGESSIALV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G39860			unknown protein		Potri.005G076000 [exp]	0	1
AT3G10330			Cyclin-like family protein (.1...		Potri.006G048400 [exp]	1.73	0.7178	TFIIB1.2
AT2G27790			RNA-binding (RRM/RBD/RNP motif...		Potri.009G167600 [exp]	5.47	0.6466
AT4G17180			O-Glycosyl hydrolases family 1...		Potri.016G002800 [exp]	14.07	0.6148
AT2G26210			Ankyrin repeat family protein ...		Potri.018G047000 [exp]	14.83	0.6184
AT1G63900		DAL1	DIAP1-like protein 1, E3 Ubiqu...		Potri.014G138000 [exp]	27.71	0.5891	Pt-ZCF61.1
AT4G35190		LOG5	LONELY GUY 5, Putative lysine ...		Potri.002G012500 [exp]	28.16	0.6124
AT1G04990	C3HZnF		Zinc finger C-x8-C-x5-C-x3-H t...		Potri.002G223700 [exp]	30.03	0.5898	ZFN2.2
AT3G20320		ABCI15, TGD2	ATP-binding cassette I15, trig...		Potri.017G026100 [exp]	33.67	0.6285
AT1G43850		SEU	SEUSS transcriptional co-regul...		Potri.007G109400 [exp]	39.24	0.5916
AT2G33255			Haloacid dehalogenase-like hyd...		Potri.010G063700 [exp]	42.07	0.6105

Compare expression of checked genes

Potri.005G076000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.