Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G65030 154 / 1e-47 unknown protein AT5G10210 139 / 2e-41 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G092300 [exp] 335 / 6e-119 AT5G65030 155 / 8e-48 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041694 [exp] 193 / 2e-62 AT5G65030 122 / 2e-34 unknown protein Lus10041693 [exp] 193 / 2e-62 AT5G65030 122 / 2e-34 unknown protein Lus10014339 [exp] 192 / 4e-62 AT5G65030 135 / 7e-40 unknown protein Lus10024055 [exp] 189 / 1e-60 AT5G65030 124 / 2e-35 unknown protein Lus10026049 [exp] 184 / 1e-58 AT5G65030 129 / 3e-37 unknown protein Lus10041692 [exp] 183 / 2e-58 AT5G65030 118 / 4e-33 unknown protein Lus10026048 [exp] 173 / 2e-54 AT5G65030 129 / 3e-37 unknown protein Lus10014340 [exp] 81 / 2e-19 AT5G65030 62 / 2e-12 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0154 [poplar] [flax] C2 PF00168 [poplar] [flax] C2 C2 domain
Representative CDS sequence Show only first row Show all	>Potri.005G076100.1 pacid=42803261 polypeptide=Potri.005G076100.1.p locus=Potri.005G076100 ID=Potri.005G076100.1.v4.1 annot-version=v4.1 ATGGGTGCCGCTACTGAAGGTATCGCGAGTACTTGTCTTGGCATTGAAATAGAAATCTTTCAAGCAAAAAATATAGAAGTCAAGTCCCATGGGAGCCTTT TTGTTAGATACTATCTCTCTGCAGGAAAGAACAAAAGAATCCAACTGAAGAGCCGAGAAATCTCCTCAAAGTCCAACCTCTTTTGGAACGAGTCCTTCTC ATTGGAGTGTATAGGCACTGAAGACTCCATCAACAACCTAAAGCAAGAGACTGTAGTTTTCGAGCTCAGATGGAGAAACACAAATCCGATCCTTGCTAAA ATAGGAGGGTCACAACTCCTTGGTAGAGCTGAGGTTCCATGGAAAACAGTTCTTGAATCACCAAATTTGGAAATGGAAAGTTGGGTTATGATGGTTCCAA AGAAGGGTAGTGTTCCTGACGACGTCAAGCCTCCTTCAGTGCAAATAGCAATGAGAGCTAGAGTTCCAGAAATGACAGAGATGGAGAAGAAGAACAGGAG AGATGGCAGGTTGAGGAAGAGAGATGGATGTGGTTGTTGCAAGGATAGTGGGTGCAGGTGTGAAGATTATGAAATTTTTGCCCTAGTGGTTGCTTTGGAA GCACTATAA
AA sequence Show only first row Show all	>Potri.005G076100.1 pacid=42803261 polypeptide=Potri.005G076100.1.p locus=Potri.005G076100 ID=Potri.005G076100.1.v4.1 annot-version=v4.1 MGAATEGIASTCLGIEIEIFQAKNIEVKSHGSLFVRYYLSAGKNKRIQLKSREISSKSNLFWNESFSLECIGTEDSINNLKQETVVFELRWRNTNPILAK IGGSQLLGRAEVPWKTVLESPNLEMESWVMMVPKKGSVPDDVKPPSVQIAMRARVPEMTEMEKKNRRDGRLRKRDGCGCCKDSGCRCEDYEIFALVVALE AL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G65030			unknown protein		Potri.005G076100 [exp]	0	1
AT1G22360		ATUGT85A2, AT2	UDP-glucosyl transferase 85A2 ...		Potri.002G098300 [exp]	6.78	0.8384
AT2G25180	GARP	ARR12	response regulator 12 (.1)		Potri.006G262100 [exp]	7.21	0.7767
AT1G78380		GST8, ATGSTU19	GLUTATHIONE TRANSFERASE 8, A. ...		Potri.001G437200 [exp]	12.36	0.7906
AT4G39330		AtCAD1, ATCAD9	cinnamyl alcohol dehydrogenase...		Potri.009G062901 [exp]	18.33	0.7725
AT5G64667		IDL2	inflorescence deficient in abs...		Potri.005G189900 [exp]	19.97	0.7679
AT3G24240			Leucine-rich repeat receptor-l...		Potri.003G175700 [exp]	20.04	0.8138
AT2G18160	bZIP	GBF5, ATBZIP2	G-BOX BINDING FACTOR 5, basic ...		Potri.005G119300 [exp]	20.44	0.7619
AT5G18840			Major facilitator superfamily ...		Potri.010G026500 [exp]	32.72	0.7350
AT1G51340			MATE efflux family protein (.1...		Potri.016G053600 [exp]	38.15	0.7490
AT3G61220		SDR1	short-chain dehydrogenase/redu...		Potri.002G156800 [exp]	42.52	0.7670

Compare expression of checked genes

Potri.005G076100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.