Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G39850 2063 / 0 AtABCD1, ACN2, CTS, PED3, PXA1 PEROXISOME DEFECTIVE 3, COMATOSE, Arabidopsis thaliana ATP-binding cassette D1, acetate non-utilizing 2, ATP-binding cassette D1, peroxisomal ABC transporter 1 (.1.2.3) AT1G54350 178 / 4e-46 ABCD2 ATP-binding cassette D2, ABC transporter family protein (.1) AT1G10680 78 / 5e-14 ABCB10, PGP10 ATP-binding cassette B10, P-glycoprotein 10 (.1) AT3G28345 77 / 5e-14 MDR13, ABCB15 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) AT3G28380 73 / 1e-12 ABCB17, PGP17 ATP-binding cassette B17, P-glycoprotein 17 (.1) AT3G28390 73 / 2e-12 ABCB18, PGP18 ATP-binding cassette B18, P-glycoprotein 18 (.1) AT2G07680 71 / 7e-12 ATMRP11, ABCC13 ATP-binding cassette C13, multidrug resistance-associated protein 11 (.1) AT3G28415 70 / 1e-11 ABCB22 ATP-binding cassette B22, ABC transporter family protein (.1) AT3G28360 69 / 2e-11 ABCB16, PGP16 ATP-binding cassette B16, P-glycoprotein 16 (.1) AT1G70610 68 / 4e-11 ABCB26, ATTAP1 ATP-binding cassette B26, transporter associated with antigen processing protein 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G092200 [exp] 2424 / 0 AT4G39850 2061 / 0.0 PEROXISOME DEFECTIVE 3, COMATOSE, Arabidopsis thaliana ATP-binding cassette D1, acetate non-utilizing 2, ATP-binding cassette D1, peroxisomal ABC transporter 1 (.1.2.3) Potri.010G176400 [exp] 182 / 3e-47 AT1G54350 910 / 0.0 ATP-binding cassette D2, ABC transporter family protein (.1) Potri.017G085000 [exp] 81 / 4e-15 AT3G28345 1774 / 0.0 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) Potri.006G074400 [exp] 78 / 3e-14 AT3G28345 1243 / 0.0 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) Potri.011G133800 [exp] 77 / 7e-14 AT3G28345 1268 / 0.0 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) Potri.003G182601 [exp] 76 / 1e-13 AT2G07680 1759 / 0.0 ATP-binding cassette C13, multidrug resistance-associated protein 11 (.1) Potri.018G141300 [exp] 75 / 4e-13 AT3G28345 1093 / 0.0 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) Potri.001G417600 [exp] 73 / 1e-12 AT3G28345 1241 / 0.0 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) Potri.015G059700 [exp] 73 / 1e-12 AT5G39040 874 / 0.0 ARABIDOPSIS THALIANA TRANSPORTER ASSOCIATED WITH ANTIGEN PROCESSING PROTEIN 2, ALUMINUM SENSITIVE 1, ATP-binding cassette B27, transporter associated with antigen processing protein 2 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024056 [exp] 1719 / 0 AT4G39850 1666 / 0.0 PEROXISOME DEFECTIVE 3, COMATOSE, Arabidopsis thaliana ATP-binding cassette D1, acetate non-utilizing 2, ATP-binding cassette D1, peroxisomal ABC transporter 1 (.1.2.3) Lus10041690 [exp] 1449 / 0 AT4G39850 1404 / 0.0 PEROXISOME DEFECTIVE 3, COMATOSE, Arabidopsis thaliana ATP-binding cassette D1, acetate non-utilizing 2, ATP-binding cassette D1, peroxisomal ABC transporter 1 (.1.2.3) Lus10041691 [exp] 639 / 0 AT4G39850 613 / 0.0 PEROXISOME DEFECTIVE 3, COMATOSE, Arabidopsis thaliana ATP-binding cassette D1, acetate non-utilizing 2, ATP-binding cassette D1, peroxisomal ABC transporter 1 (.1.2.3) Lus10001758 [exp] 181 / 1e-46 AT1G54350 882 / 0.0 ATP-binding cassette D2, ABC transporter family protein (.1) Lus10001839 [exp] 132 / 2e-31 AT1G54350 670 / 0.0 ATP-binding cassette D2, ABC transporter family protein (.1) Lus10041565 [exp] 75 / 4e-13 AT3G28345 1804 / 0.0 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) Lus10023929 [exp] 74 / 6e-13 AT2G36910 2300 / 0.0 P-GLYCOPROTEIN 1, ARABIDOPSIS THALIANA P GLYCOPROTEIN1, ATP-binding cassette B1, ATP binding cassette subfamily B1 (.1) Lus10014427 [exp] 74 / 1e-12 AT2G36910 1913 / 0.0 P-GLYCOPROTEIN 1, ARABIDOPSIS THALIANA P GLYCOPROTEIN1, ATP-binding cassette B1, ATP binding cassette subfamily B1 (.1) Lus10039458 [exp] 73 / 2e-12 AT3G28345 1835 / 0.0 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) Lus10024162 [exp] 73 / 2e-12 AT3G28345 1280 / 0.0 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00005 [poplar] [flax] ABC_tran ABC transporter CL0241 [poplar] [flax] ABC_membrane PF06472 [poplar] [flax] ABC_membrane_2 ABC transporter transmembrane region 2
Representative CDS sequence Show only first row Show all	>Potri.005G076200.6 pacid=42803911 polypeptide=Potri.005G076200.6.p locus=Potri.005G076200 ID=Potri.005G076200.6.v4.1 annot-version=v4.1 ATGCCTTCTCTTCAACTCTTGCAATTAACCGAGCATGGTCGAGGCATTTTGGCCTCTAGAAGGAAATCTCTACTTTTCGCGGCTGGTATCTTAGCTGCTG GTGGGACTGCTGTGTATGTGCAGTCACGGATTAGGTCTAAGAAATCTGATTCTTTTCTTTATTACAATGGGATCAAAGATGATAAAAAGATATCAGATAA GCTGGTTACTAATGGCAAGAAAACTGTACAAAAGAAAGGAGGTTTAAAGGCACTGCAAATTCTAGCCTCAGTTCTTCTGTCCCATATGGGTAAAACAGGT GCCAAGGACCTTTTGGCTATGATTGCCATAGCAGTCTTGAAAACTACTTTGAGCAACAGATTAGCGAAAGTGCAGGGTTTTTTATTCCGTGCTGCTTTTC TCCAACGTGTACCGTTATTTTTCCGGCTGATATCTGAAAATATCTTACTTTGTTTCCTTCTATCCACCATTAATTCTACTTCGAAGTATGTAACTGGAAC CTTAAGTCTCTGTTTCCGAAAAATACTGACGAAAGTTATCCATGCACATTATTTTGAGAACATGGCATACTATAAAATATCACATGTTGATGGTCGGATT ACTAACCCTGAACAACGTATTGCAAGTGATGTACCGAGGTTCTGTTCAGAGTTGAGTGAACTTGTCCTTGATGATTTGACTGCAGTTACTGATGGTCTGC TTTATACTTGGCGCCTTTGTTCATATGCCAGCCCTAAGTATTTGTTTTGGATGGTGGCCTATGTATTGGGAGCAGGAACCTTGATTAGAAACTTCTCTCC TGCTTTTGGGAAGCTAATGTCTAAAGAACAGCAGTTAGAAGGTGAATATAGGCAGCTACATTCCCGTTTGAGGACCCATGCTGAAAGCATAGCATTTTAT GGTGGAGAAAATAGAGAAGAATTTCATATTCAGCAGAAGTTTAAGACCCTGATTGGACACATGAGAACTGTCTTACATGACCATTGGTGGTTTGGAATGA TTCAGGACTTTTTATTGAAGTATTTTGGTGCTACTGTAGCTGTTATTTTGATTATTGAGCCTTTTTTTGCTGGCCAACTTAGACCTGATGCTTCAACTTT GGGAAGGGCAGAAATGTTGAGCAATTTAAGATACCATACCAGCGTGATAATATCACTATTTCAGTCCCTGGGAACTCTTTCTATAAGTTCAAGACGACTG AATCGTCTCAGTGGTTATGCTGACCGCATTCATGAATTAATAGCCGTATCGAGAGAGCTGAGCAATGGTGATAAATCATCACTGCAAAGAAGTGGAAGCA GGAACTACTTCAGTGAAGCTAATTATGTTGAGTTTTTTGGTGTCAAGGTTGTCACCCCAAGTGGTAATGTTTTGGTTCAAGACCTGACTCTTAAAGTTGA TTCAGGATCTAATCTATTGATTACAGGTCCAAATGGTAGTGGGAAGAGCTCACTTTTCCGAGTTCTAGGTGGCCTGTGGCCATTGGTTTCTGGCCATATT GTGAAACCAGGAGTTGGTTCTGATCTTAACAAGGAGATCTTCTATGTTCCACAAAGACCATACACTGCTGTAGGCACACTCCGTGATCAATTAATTTATC CTCTTACTGCAGACCAAGAGATTGAACCACTGACCCATAGCGGAATGGTGGAGCTGTTAAAAAATGTTGACCTTGAGTATCTATTAGACCGTTATCCACC CGAGAAGGAGGTTAATTGGGGTGAGGAACTGTCACTGGGGGAGCAACAAAGGTTAGGGATGGCCAGGCTGTTCTACCATAAGCCAAAATTTGCAATTCTT GATGAGTGCACTAGTGCTGTGACTACTGATATGGAGGAACGTTTTTGTGCTCAAGTACAAGCTATGGGAACATCTTGCATAACCATATCTCATCGTCCAG CTCTAGTTGCATTTCATGATGTGGTTTTGTCCTTGGATGGAGAAGGAGGCTGGCTTGTTAATTACAAAGGGAAGGATTCTCCAGCCCTGACTGAAGCTGG GGGTGATCTCACAGGGGATTTTGAGACAGAACGCAAAAATGATGCCATGATAGTTCAAAAAGCATTTTCCACAAGTGATAAGGCCACACACTCGTATATT TCAGAAGTGATAGCAGCATCACCCAACATAGACCATAATGTTCTATTGCCCATTGTTCCACCACTTCAAAGGGCTCCAAGGGCATTGCCACTGAGAGTAG CTGCCATGTTTAAAATATTGGTACCAACTATACTTGACAAACAAGGGGCACACTTATTAGCAGTTGCTTTCCTTGTTATCTCAAGAACATTTGTCTCAGA TCGGATTGCCTCATTGAATGGTACAACTGTAAAGTTTGTTTTGGAGCAGGACAAAGCATCTTTTGTTCGATTAATAGGTGTTAGTGTTCTTCAAAGTGCT GCGTCGTCTTTTATTGCACCTTCTTTGAGACACTTGACAACTCGGCTGGCCCTTGGATGGAGGATTCGTTTGACTCAACATCTACTAAAGAACTATTTGA GAAACAATACATTTTACAAGGTTTTCCACATGTCTAGCAAAAATATTGATGCAGATCAGAGAATAACACATGATCTGGAAAAGTTAACCACGGACTTGTC TGGACTGGTAACTGGAATGGTGAAGCCATTAGTAGATATCTTGTGGTTCACCTGGAGAATGAAGCTCTTAACAGGTCAGAGGGGAGTTGCCATATTGTAT ACTTATATGTTGCTTGGTTTGGGTTTTCTGAGGGCTGTTACTCCTGATTTTGGTGATCTTGCTAGTGAAGAGCAACAACTTGAAGGAACCTTTAGGTTCA TGCATGAGAGACTGCGCACACATGCTGAATCTGTTGCTTTCTTTGGAGGTGGAAAACGAGAAAAAGCTATGATTGAGTCAAGATTCAGGGAACTTCTTGA CCATTCCATGTTGCTTTTGAAAAAGAAATGGTCATATGGCATACTCGATGATTTTGTGACAAAGCAACTCCCACATAATGTAACTTGGGGTTTGAGCTTG TTGTATGCCATGGAACACAAGGGAGATCGAGCCATGACCTCAACTCAAGGCGAACTGGCACATGCATTGCGGTTCTTAGCATCTGTTGTCTCTCAAAGCT TTTTAGCCTTTGGAGACATCCTTGAATTGCACAAGAAGTTTGCTGAGCTTTCTGGCAGTATAAATAGAATTTTTGAACTTGAAGAGCTTCTGGATGCTGC TCAGTCTGGGGATTCTTTGAATAGTAAACTATCTCAATCTAAGAACATTGAACTTTACTCAAAAGATGCCATTTCCTTTATGGAGGTCGATATCATTACT CCAGCACAGAAATTGTTGGCGAGGCAGTTGACATTTGACATAGAACAAAGAAAAAGCCTGCTTCTAACTGGTCCAAACGGGAGTGGGAAAAGTTCTGTTT TTAGAGTCCTCAGAGGTCTTTGGCCCATTGCTAGTGGAAGGATTGCTAAACCATCACAACATATTAGTAAAGAGACTGGATCAGGTTGTGCTGTCTTCTA TGTTCCTCAACGACCATATACATGCTTGGGAACCTTGAGAGATCAAATTATCTATCCTCTCTCTCGTGATGAAGCAGAAGTCATGACACTAGAGTTGTAT GAAAAAGGTAAGCTATCCACCGAAATAACAAACATGCTGGACTCGTGTTTGAAAAATATTCTGGAGAATGTTCGGCTAAATTATCTCTTGGAGAGAGAAG GCGGCTGGGATGCAAATATGAATTGGGAAGACACTCTCTCTCTTGGAGAACAGCAGAGATTAGGCATGGCCCGCCTATTCTTTCACAAGCCTAAATTTGC CATCCTTGATGAGTGCACCAACGCAACAAGTGTTGATGTTGAGGAACAACTTTATAGGCTTGCTAGTGACATGGGCATCACATTTATTACCTCCTCTCAG CGTCCTGCTCTCATACCATTCCACTCCCTGGAATTGCGGCTTATTGATGGCGAGGGCCACTGGGAGCTTCGTGCAATTAAGCAATGA
AA sequence Show only first row Show all	>Potri.005G076200.6 pacid=42803911 polypeptide=Potri.005G076200.6.p locus=Potri.005G076200 ID=Potri.005G076200.6.v4.1 annot-version=v4.1 MPSLQLLQLTEHGRGILASRRKSLLFAAGILAAGGTAVYVQSRIRSKKSDSFLYYNGIKDDKKISDKLVTNGKKTVQKKGGLKALQILASVLLSHMGKTG AKDLLAMIAIAVLKTTLSNRLAKVQGFLFRAAFLQRVPLFFRLISENILLCFLLSTINSTSKYVTGTLSLCFRKILTKVIHAHYFENMAYYKISHVDGRI TNPEQRIASDVPRFCSELSELVLDDLTAVTDGLLYTWRLCSYASPKYLFWMVAYVLGAGTLIRNFSPAFGKLMSKEQQLEGEYRQLHSRLRTHAESIAFY GGENREEFHIQQKFKTLIGHMRTVLHDHWWFGMIQDFLLKYFGATVAVILIIEPFFAGQLRPDASTLGRAEMLSNLRYHTSVIISLFQSLGTLSISSRRL NRLSGYADRIHELIAVSRELSNGDKSSLQRSGSRNYFSEANYVEFFGVKVVTPSGNVLVQDLTLKVDSGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHI VKPGVGSDLNKEIFYVPQRPYTAVGTLRDQLIYPLTADQEIEPLTHSGMVELLKNVDLEYLLDRYPPEKEVNWGEELSLGEQQRLGMARLFYHKPKFAIL DECTSAVTTDMEERFCAQVQAMGTSCITISHRPALVAFHDVVLSLDGEGGWLVNYKGKDSPALTEAGGDLTGDFETERKNDAMIVQKAFSTSDKATHSYI SEVIAASPNIDHNVLLPIVPPLQRAPRALPLRVAAMFKILVPTILDKQGAHLLAVAFLVISRTFVSDRIASLNGTTVKFVLEQDKASFVRLIGVSVLQSA ASSFIAPSLRHLTTRLALGWRIRLTQHLLKNYLRNNTFYKVFHMSSKNIDADQRITHDLEKLTTDLSGLVTGMVKPLVDILWFTWRMKLLTGQRGVAILY TYMLLGLGFLRAVTPDFGDLASEEQQLEGTFRFMHERLRTHAESVAFFGGGKREKAMIESRFRELLDHSMLLLKKKWSYGILDDFVTKQLPHNVTWGLSL LYAMEHKGDRAMTSTQGELAHALRFLASVVSQSFLAFGDILELHKKFAELSGSINRIFELEELLDAAQSGDSLNSKLSQSKNIELYSKDAISFMEVDIIT PAQKLLARQLTFDIEQRKSLLLTGPNGSGKSSVFRVLRGLWPIASGRIAKPSQHISKETGSGCAVFYVPQRPYTCLGTLRDQIIYPLSRDEAEVMTLELY EKGKLSTEITNMLDSCLKNILENVRLNYLLEREGGWDANMNWEDTLSLGEQQRLGMARLFFHKPKFAILDECTNATSVDVEEQLYRLASDMGITFITSSQ RPALIPFHSLELRLIDGEGHWELRAIKQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G39850		AtABCD1, ACN2, ...	PEROXISOME DEFECTIVE 3, COMATO...		Potri.005G076200 [exp]	0	1
AT1G02890			AAA-type ATPase family protein...		Potri.014G131000 [exp]	6.48	0.7350
AT2G25660		EMB2410	embryo defective 2410 (.1)		Potri.018G034700 [exp]	9.16	0.7330
AT3G06400		CHR11	chromatin-remodeling protein 1...		Potri.008G205600 [exp]	11.66	0.6848
AT4G38600		UPL3, KAK	UBIQUITIN-PROTEIN LIGASE 3, KA...		Potri.009G134300 [exp]	20.56	0.7261
AT3G14270		FAB1B	FORMS APLOID AND BINUCLEATE CE...		Potri.001G163200 [exp]	23.23	0.7039
AT1G01790		ATKEA1, KEA1	K+ efflux antiporter 1, K+ EFF...		Potri.014G080800 [exp]	25.23	0.6928
AT3G14270		FAB1B	FORMS APLOID AND BINUCLEATE CE...		Potri.003G072300 [exp]	27.20	0.7140
AT4G17140			pleckstrin homology (PH) domai...		Potri.001G148800 [exp]	34.05	0.6559
AT4G30100			P-loop containing nucleoside t...		Potri.005G168300 [exp]	40.49	0.6788
AT2G02560		TIP120, HVE, ET...	HEMIVENATA, CULLIN-ASSOCIATED ...		Potri.003G000500 [exp]	42.35	0.6502	CAND1.2

Compare expression of checked genes

Potri.005G076200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.