Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G10200 1113 / 0 ARM-repeat/Tetratricopeptide repeat (TPR)-like protein (.1) AT5G43120 503 / 3e-172 ARM-repeat/Tetratricopeptide repeat (TPR)-like protein (.1) AT3G50030 409 / 5e-137 ARM-repeat/Tetratricopeptide repeat (TPR)-like protein (.1) AT4G30480 50 / 3e-06 TPR1, AtTPR1 tetratricopeptide repeat 1, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2), Tetratricopeptide repeat (TPR)-like superfamily protein (.3) AT1G12270 47 / 5e-05 Hop1 Hop1, stress-inducible protein, putative (.1) AT4G12400 46 / 8e-05 Hop3 Hop3, stress-inducible protein, putative (.1.2) AT4G32070 45 / 0.0002 Phox4 Phox4, Octicosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratricopeptide repeat (TPR)-containing protein (.1) AT1G62740 44 / 0.0004 Hop2 Hop2, stress-inducible protein, putative (.1) AT1G04130 43 / 0.0005 TPR2, AtTPR2 tetratricopeptide repeat 2, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G56090 42 / 0.0005 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G092100 [exp] 1239 / 0 AT5G10200 1085 / 0.0 ARM-repeat/Tetratricopeptide repeat (TPR)-like protein (.1) Potri.002G120800 [exp] 567 / 0 AT5G43120 635 / 0.0 ARM-repeat/Tetratricopeptide repeat (TPR)-like protein (.1) Potri.007G052300 [exp] 548 / 0 AT5G43120 580 / 0.0 ARM-repeat/Tetratricopeptide repeat (TPR)-like protein (.1) Potri.011G021000 [exp] 50 / 4e-06 AT1G62390 885 / 0.0 Phox2, CLUMPED CHLOROPLASTS 1, Octicosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratricopeptide repeat (TPR)-containing protein (.1) Potri.004G002900 [exp] 48 / 2e-05 AT1G62390 926 / 0.0 Phox2, CLUMPED CHLOROPLASTS 1, Octicosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratricopeptide repeat (TPR)-containing protein (.1) Potri.006G033400 [exp] 46 / 6e-05 AT5G48570 596 / 0.0 FKBP-type peptidyl-prolyl cis-trans isomerase family protein (.1) Potri.002G248300 [exp] 45 / 0.0002 AT3G25230 857 / 0.0 FK506 BINDING PROTEIN 62, rotamase FKBP 1 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006301 [exp] 1122 / 0 AT5G10200 1059 / 0.0 ARM-repeat/Tetratricopeptide repeat (TPR)-like protein (.1) Lus10029573 [exp] 1120 / 0 AT5G10200 1056 / 0.0 ARM-repeat/Tetratricopeptide repeat (TPR)-like protein (.1) Lus10018706 [exp] 466 / 5e-157 AT5G43120 534 / 0.0 ARM-repeat/Tetratricopeptide repeat (TPR)-like protein (.1) Lus10024789 [exp] 461 / 4e-156 AT5G43120 533 / 0.0 ARM-repeat/Tetratricopeptide repeat (TPR)-like protein (.1) Lus10032234 [exp] 51 / 2e-06 AT1G62740 892 / 0.0 Hop2, stress-inducible protein, putative (.1) Lus10024597 [exp] 48 / 3e-05 AT1G62740 886 / 0.0 Hop2, stress-inducible protein, putative (.1) Lus10004336 [exp] 47 / 4e-05 AT1G62740 873 / 0.0 Hop2, stress-inducible protein, putative (.1) Lus10025888 [exp] 45 / 0.0002 AT3G25230 870 / 0.0 FK506 BINDING PROTEIN 62, rotamase FKBP 1 (.1.2) Lus10038216 [exp] 45 / 0.0002 AT3G25230 870 / 0.0 FK506 BINDING PROTEIN 62, rotamase FKBP 1 (.1.2) Lus10028919 [exp] 45 / 0.0002 AT1G62740 890 / 0.0 Hop2, stress-inducible protein, putative (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF13414 [poplar] [flax] TPR_11 TPR repeat
Representative CDS sequence Show only first row Show all	>Potri.005G076300.2 pacid=42803645 polypeptide=Potri.005G076300.2.p locus=Potri.005G076300 ID=Potri.005G076300.2.v4.1 annot-version=v4.1 ATGGATAAAGTATCCCCCGACTGTCCTTATCCAGGATGCTTTTTTTGTGTCATGAAGGAAGGGAATCCAAGTAAGCGCAGAGCTAGTATACTGAAATTCT TCAGAGAACTTCCTTCGCAGGATGATGATGGCCAGGTTCTCCCAATCAGTGGCCTTTGGAACACTGCCATGGCACATCCAAATGACCCTGAGTTCATTGA ATTGGGAATATTTGAATGCATGGTTGCTCTTATATGGAAAGGCTTAAAGAATCGCCGCTGGCTTTCTCATGATCAGAACATATACATTCCTTACTATGCA GCTCATATTATCGGATCCTACACCATGAACATGGAAGAGTTTGCAGAAAGTGCTATCCATGCTGGTGTAACTCCTCCCTTAGTTGAGCTTTTGAGGGGGA GGTTGACATGGGTTGAACAAAGAGTAGCGGTACGGGCACTAGGACACTTGGCCACATACACCAACACTTTCCCTGCTGTGGCAAGTCATGGTGAAATCCT TGAACTCGCCATCCAACTAGCAATGAGTTCACTAGAAATAGTTTACTCACATTTTTACCAATACGCTGATAGAAGGCTTAGTTATCATTGCGATTTGCTT ACCCGTGGCATGGGTGGTGTTGAAATGGAGTCCAGGAAAGCAGAGGAATGGGCTAGTCAGTTACAGTGCTGGTCCCTTCAACTCATTAATTGCTTTGCTT TTAAGCCCGAATTTCTTCCTACCATATGCAAGCCTGAATTCTTGGTAAAACTGCCAGGCATGTGGGGCGGGCTTGTTAATGAAAACTCACCTGCTGGTAT TGGTTTATTAAGAACAATCTGTCATCATAAGCTTGGTAGGGGACCTGTTGCTAGCTGTCCTGGTATTATTGAAGCATTGTGTAATATAGCTAGGTCATCA GATGATTGGCAGTATATGGCTATAGACTGTCTTCTTTGGTTGATCCAAGATCCAAGTACATGCCATAAGGTCATTGATAAGGCAGTACCTGCACTTGTAG ACCTAGCAGAGATTACAAATCTGGGCGATCACAAAAAACTCGGGGACTACATTGTTAATGTTCTTCAGGAATGTTTGCAATCACAAGGGACAGGGCGTAA CAGTATCAGTAATCATGTGAAGGAACTGATCGAGGAACTATTGAATTCCAAACAGAGATTGAAATGGGAAAAGAGCATGCCCAAGGAGGATCTCCATATT AAACAGGCAGCTGCACTGGTGGTCAAGCTTGAAGGAAATTCCCTATTCTCATCAGGAAACATAGCGGGAGCTGCATCGAAATACTCAGAAGCATTGTCAT TGTGTCCAATGAGATCGAAAAAAGAGAGAGTTGTTCTGTACAGTAATCGAGCTCAGTGTCATCTTCTGTTGCAACAGCCATTGGCAGCAATAAGTGATGC TACACGTGCACTCTGTCTTCACAGCCCTCTTAACCGACATGCCAAAAGCCTTTGGAGAAGAGCTCAAGCTTATGACATGCTTGACTTAGCAAAAGAGAGC TTGTTAGATGCCATTTTGTTCATTAATGAATGCTCTCAGTCAAATGATCCTGACCTCTCTTTGAGGCAGAACAAAGTTCCTGACTATGCTGAGCGACTAG TCAAAAAGCAGATGCGTGCAGCCTGGTTATTTAGAGAGGCAGCCATCAAACATGGGGGTGTCCATGGTGAGGGAGATGCTGGTGACATCTATGGCCAGGA AAGTGATGGTTCAGAATGGGAAACAGCGAGTGAAAGTGACATAGGAAACGATGGAAGGGCTGAAATGGGTGACGACGACGACGACGATAGTGAATGGAAG AACGAGGATAAGAGGAAAGATAAATATGATAAAGTAACATTAAAAGATTTAAAGCATGGGTACAATGTGCATCTTGCGGAAGATCAATCTTGA
AA sequence Show only first row Show all	>Potri.005G076300.2 pacid=42803645 polypeptide=Potri.005G076300.2.p locus=Potri.005G076300 ID=Potri.005G076300.2.v4.1 annot-version=v4.1 MDKVSPDCPYPGCFFCVMKEGNPSKRRASILKFFRELPSQDDDGQVLPISGLWNTAMAHPNDPEFIELGIFECMVALIWKGLKNRRWLSHDQNIYIPYYA AHIIGSYTMNMEEFAESAIHAGVTPPLVELLRGRLTWVEQRVAVRALGHLATYTNTFPAVASHGEILELAIQLAMSSLEIVYSHFYQYADRRLSYHCDLL TRGMGGVEMESRKAEEWASQLQCWSLQLINCFAFKPEFLPTICKPEFLVKLPGMWGGLVNENSPAGIGLLRTICHHKLGRGPVASCPGIIEALCNIARSS DDWQYMAIDCLLWLIQDPSTCHKVIDKAVPALVDLAEITNLGDHKKLGDYIVNVLQECLQSQGTGRNSISNHVKELIEELLNSKQRLKWEKSMPKEDLHI KQAAALVVKLEGNSLFSSGNIAGAASKYSEALSLCPMRSKKERVVLYSNRAQCHLLLQQPLAAISDATRALCLHSPLNRHAKSLWRRAQAYDMLDLAKES LLDAILFINECSQSNDPDLSLRQNKVPDYAERLVKKQMRAAWLFREAAIKHGGVHGEGDAGDIYGQESDGSEWETASESDIGNDGRAEMGDDDDDDSEWK NEDKRKDKYDKVTLKDLKHGYNVHLAEDQS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G10200			ARM-repeat/Tetratricopeptide r...		Potri.005G076300 [exp]	0	1
AT4G25610	C2H2ZnF		C2H2-like zinc finger protein ...		Potri.015G146300 [exp]	2.00	0.7422
AT5G41685			Mitochondrial outer membrane t...		Potri.018G146602 [exp]	3.00	0.7452
					Potri.013G109201 [exp]	8.83	0.6828
AT2G30470	B3	HSI2, VAL1	VP1/ABI3-LIKE 1, high-level ex...		Potri.013G157500 [exp]	13.63	0.7339
AT1G69910			Protein kinase superfamily pro...		Potri.010G035300 [exp]	25.41	0.6989
AT2G26070		RTE1	REVERSION-TO-ETHYLENE SENSITIV...		Potri.018G053900 [exp]	28.86	0.6765
AT2G30933			Carbohydrate-binding X8 domain...		Potri.005G003500 [exp]	36.53	0.7117
AT3G12710			DNA glycosylase superfamily pr...		Potri.010G175300 [exp]	37.30	0.6904
AT3G19360	C3HZnF		Zinc finger (CCCH-type) family...		Potri.004G169500 [exp]	37.70	0.7026
AT4G16650			O-fucosyltransferase family pr...		Potri.003G077500 [exp]	45.82	0.6986

Compare expression of checked genes

Potri.005G076300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.