Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G38070 82 / 6e-20 bHLH basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G415800 [exp] 132 / 1e-37 AT4G38070 587 / 0.0 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.011G131500 [exp] 123 / 2e-34 AT4G38070 580 / 0.0 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025718 [exp] 92 / 3e-23 AT4G38070 669 / 0.0 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10035943 [exp] 89 / 3e-22 AT4G38070 680 / 0.0 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.005G076400.2 pacid=42804748 polypeptide=Potri.005G076400.2.p locus=Potri.005G076400 ID=Potri.005G076400.2.v4.1 annot-version=v4.1 ATGCACAGAAATTGCTCTGCAAATCTTAAAGCTAAAGAAGCTGACCGGAGCTCTCAACTGGAGAAACTAACTGGAGAGCTGGATAATTACGGGTCTGCAC TAGAGAACAAAGAAACAGCAATAAAAGAGCTTGGCATGGAATTGAAAAATTGCCACTCTATGATATTGCAGTTGAAGTTGCAGAATGAGGAGGCTTCATC AATGATACTGGTATTGAAATCAGGAATAACTGAGGCTTAA
AA sequence Show only first row Show all	>Potri.005G076400.2 pacid=42804748 polypeptide=Potri.005G076400.2.p locus=Potri.005G076400 ID=Potri.005G076400.2.v4.1 annot-version=v4.1 MHRNCSANLKAKEADRSSQLEKLTGELDNYGSALENKETAIKELGMELKNCHSMILQLKLQNEEASSMILVLKSGITEA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G38070	bHLH		basic helix-loop-helix (bHLH) ...		Potri.005G076400 [exp]	0	1
AT3G18380		SHH2	SAWADEE homeodomain homolog 2,...		Potri.011G097500 [exp]	3.87	0.7443
AT1G75400			RING/U-box superfamily protein...		Potri.002G031600 [exp]	4.24	0.7808
AT5G61390			Polynucleotidyl transferase, r...		Potri.015G062000 [exp]	6.63	0.7828
AT1G29510		SAUR68	SMALL AUXIN UPREGULATED 68, SA...		Potri.002G064300 [exp]	9.16	0.7689	SAUR61
AT3G62010			unknown protein		Potri.002G184400 [exp]	11.35	0.8036
AT3G47500	DOF	CDF3, AtDof3,3	cycling DOF factor 3 (.1)		Potri.013G066700 [exp]	12.48	0.7788
AT1G07150		MAPKKK13	mitogen-activated protein kina...		Potri.009G073200 [exp]	14.28	0.7526
AT2G37340		RSZ33, ATRSZ33,...	arginine/serine-rich zinc knuc...		Potri.006G205800 [exp]	19.79	0.7669
AT4G36730	bZIP	GBF1	G-box binding factor 1 (.1.2)		Potri.007G029400 [exp]	20.49	0.7511
AT3G03140			Tudor/PWWP/MBT superfamily pro...		Potri.013G081400 [exp]	22.49	0.7578

Compare expression of checked genes

Potri.005G076400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.