Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G39840 370 / 1e-124 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G091900 [exp] 592 / 0 AT4G39840 360 / 5e-121 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041688 [exp] 354 / 1e-117 AT4G39840 345 / 1e-114 unknown protein Lus10024058 [exp] 0 / 1 AT4G39840 158 / 9e-60 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.005G076500.3 pacid=42804652 polypeptide=Potri.005G076500.3.p locus=Potri.005G076500 ID=Potri.005G076500.3.v4.1 annot-version=v4.1 ATGGCTCCACCCAAGTACTTGATCTGTTTCAGTCTCAGACAGGTACCTCTGCTTTATCTTGTTTTGTTCTTGTTTACTTCCCTTCTCCTCTGTGCCTCCT CAGACAGTGATCAGCAGCAGCAGCTTCAAACCGATCGATTTCTTGTTAGAAGAAGAATGTTGGAAGTGGAAACATATGACGACCAAGTACCCAAGAAAAA AAACACCAATTTATCCTCCAAGAATCAAACCAAGCTCACCAGCCCTAGCCTATCTACAAAAAACCAAACCAAGCCCATCAAGACTGGCAGCCTATCCACC AAGAACCAAACCAAGATTACAAAATCTACAAACTCAACAAAAGCAACACTCACCGATTCCCAATCCAAGAATCAGCTTAAGAAGCTCAATACCACTTCTC AGCTCAAAAGGCTAAACTCCACTTCGCAGCTCAAGAAACTCAATTCCACCTCGAAAGCCTCCAACTTCACCAAATCCATTGCTGGTTCCACCAAGAAAAC ACCAGATCTACTCAAACTAGGCTCATCCACCGACAAAACAACCAAACCCACTTCCACAAAGCAAACACAATCCCTTGTAGACAAGAAAGTCGGTAACCAA GAATCCCAAAAACAAAACAAAAACCAAAAACAAACCAATGAAAAAAAGACCACTCAATCTAAAAAACAACCAAGCTGGATTGGACAACATGATGAAGATG ATTTGGTTGCTGAATTCAGAGATCTTCCATCAAAGTTTCATCAAACTCTCATACCAGACCTTGAGAGAATCTCAATAACTTCCAAGAAGTATCTTACAAA AGCCAACAATGATTTGACCAGAGGGTTCAAGCCAATTGTTGGAAACAAGTATGCACCTACCATTGCCTCTATAGTCTCTTTTGCATTCATTCTAATACCT CTACTTCTTGTCTCTCTTATCTTTAACCACATCAAAGCTTATTTCTCTATACAAAAGATCTTGATTTTCATCCAAGTTTATCTCTCAATCTACTTCACCA TTCTATGCCTCTCTTCATTAGTTACTGGGCTTGAGCCCTTGAAGTTCTTCTATGCTACTTCACAGTCCACTTACGTTTGCTTAATGGTTCTTCAAACCCT TGGCTATGCACTGTACTTGTTGTTGCTATTGATGTATTTGATCCTGGTCTTTTCCACGGAGTGTGGGTTGAGCTCAAAGTTTCTGGGCCTGGGTCAGACC CTGGTGGGCTACGCAGTTGGGCTGCACTACTACGTGGCAGTGTTTCATAGGGTTGTCTTGCACCAACCACCCAAGACTAATTGGAAGGTTCATGGGATTT ATGCCACGTGTTTCCTCGTGATTTGTCTGTTTGCTAACGCTGAGAGGAGAAAGAAGGCTTACTTGGAAGAGGGTGGTGAAGAGGGTAAGAAGAACTAG
AA sequence Show only first row Show all	>Potri.005G076500.3 pacid=42804652 polypeptide=Potri.005G076500.3.p locus=Potri.005G076500 ID=Potri.005G076500.3.v4.1 annot-version=v4.1 MAPPKYLICFSLRQVPLLYLVLFLFTSLLLCASSDSDQQQQLQTDRFLVRRRMLEVETYDDQVPKKKNTNLSSKNQTKLTSPSLSTKNQTKPIKTGSLST KNQTKITKSTNSTKATLTDSQSKNQLKKLNTTSQLKRLNSTSQLKKLNSTSKASNFTKSIAGSTKKTPDLLKLGSSTDKTTKPTSTKQTQSLVDKKVGNQ ESQKQNKNQKQTNEKKTTQSKKQPSWIGQHDEDDLVAEFRDLPSKFHQTLIPDLERISITSKKYLTKANNDLTRGFKPIVGNKYAPTIASIVSFAFILIP LLLVSLIFNHIKAYFSIQKILIFIQVYLSIYFTILCLSSLVTGLEPLKFFYATSQSTYVCLMVLQTLGYALYLLLLLMYLILVFSTECGLSSKFLGLGQT LVGYAVGLHYYVAVFHRVVLHQPPKTNWKVHGIYATCFLVICLFANAERRKKAYLEEGGEEGKKN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G39840			unknown protein		Potri.005G076500 [exp]	0	1
AT5G20950			Glycosyl hydrolase family prot...		Potri.013G055600 [exp]	6.55	0.6191
					Potri.001G178400 [exp]	16.70	0.5801
AT3G11450			DnaJ domain ;Myb-like DNA-bind...		Potri.003G190000 [exp]	18.65	0.5979
AT3G23750			Leucine-rich repeat protein ki...		Potri.006G073900 [exp]	19.07	0.6138	RHG4.2
AT1G17180		ATGSTU25	glutathione S-transferase TAU ...		Potri.011G113300 [exp]	35.41	0.5568
AT1G17180		ATGSTU25	glutathione S-transferase TAU ...		Potri.011G112900 [exp]	48.06	0.5510
AT2G25280			unknown protein		Potri.006G258200 [exp]	50.19	0.5745
AT5G55830			Concanavalin A-like lectin pro...		Potri.011G093700 [exp]	53.44	0.5724
AT1G29350			Kinase-related protein of unkn...		Potri.011G078800 [exp]	59.51	0.5678
AT3G09880		ATB' BETA, ATB'...	Protein phosphatase 2A regulat...		Potri.009G138400 [exp]	64.18	0.5267

Compare expression of checked genes

Potri.005G076500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.