Plant FIBer expression Database

Potri.005G076600 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G65170 70 / 8e-13 VQ motif-containing protein (.1)
AT1G35830 69 / 8e-13 VQ motif-containing protein (.1)
AT4G39720 68 / 2e-12 VQ motif-containing protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.007G091600
[exp]
487 / 4e-169 AT5G65170 72 / 2e-13 VQ motif-containing protein (.1)
Potri.002G094900
[exp]
162 / 2e-44 AT1G35830 89 / 1e-19 VQ motif-containing protein (.1)
Potri.005G166100
[exp]
155 / 7e-42 AT5G65170 94 / 8e-21 VQ motif-containing protein (.1)
Potri.001G158800
[exp]
50 / 1e-06 AT4G39720 58 / 6e-10 VQ motif-containing protein (.1)
Potri.016G029600
[exp]
46 / 3e-05 AT3G56880 125 / 4e-35 VQ motif-containing protein (.1)
Potri.003G075800
[exp]
45 / 6e-05 AT3G22160 54 / 8e-09 VQ motif-containing protein (.1)
Potri.006G032300
[exp]
42 / 0.0006 AT3G56880 127 / 1e-35 VQ motif-containing protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10024738
[exp]
73 / 9e-14 AT1G35830 92 / 3e-21 VQ motif-containing protein (.1)
Lus10006941
[exp]
72 / 2e-13 AT1G35830 93 / 3e-21 VQ motif-containing protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF05678 VQ VQ motif
Representative CDS sequence
>Potri.005G076600.1 pacid=42803258 polypeptide=Potri.005G076600.1.p locus=Potri.005G076600 ID=Potri.005G076600.1.v4.1 annot-version=v4.1
ATGGATTCTAGCAATAGTGGAAGTATGCAATCCTCAAGTGGTGGAGATGAAGAGTATGATTCATCACGCGCTGAGTCAATCTCAGCTTTCTTGAACAGCA
ACAATAACAAAAACAACCCTTTCAGCCATGTTGGTCCCATGCCTCATAACCAACCGCCAGAACCAGACCATCACCACCACCAATCCCACCACTCTTCTTC
ATCTTCAACTATGTTTTTTGACCCTTTTTCAAACTATTTTGATCCTTTAGCACCATCATCATCATCATCAAGATCACCACTACAATCACTTACGAACCCA
AATTCACTCAACAACCTTGATATGGTCTGGTCAAAGAACTTAAGATCTGACCCCAATTGCACTGATCTTGGTGGGTTCATTTCCTCTTCCTTACCAACCC
AACAGTTCACCAACCAAACTCAAAATAGAACCACTTTTCAGTCTCTACCATCACATGGACAAGAAAGTGCTACAAGAGTTCCAGGTTCAGGTTCAGTTTC
AGGGACAAATGATCAAGTCAGCAACACTGCAGGGATTAGAAACCCGAAGAAAAGATCAAGAGCTTCTAGGCGTGCACCAACAACTGTCTTGAGCACGGAC
ACCACCAATTTCAGAGCCATGGTTCAGGAGTTTACAGGGATCCCTGCACCACCCTTCACATCCTCACCTTTCCCAAGGAGCAGACTTGATCTATTTGGGA
CTGCAGCCTCCACTTTGAGATCAGCTGTCTCTCAACATTTGGACCCTTCACCACCCCCCTACCTCTTAGGACCTTTTGCTAAAAAATTCCAACCACCTCC
ACCACCACCATTTGTCTCTTCAGGTTCTGCTGCATCATCATTTTCTGCTTCTATGGTTGATGCTATAGCTTCCACTACTGCAACCAACATCAATGGCACT
TGTACTAACACTACCATTTCAAATAATATCCCTTTAACATCCATTAACTACCAACTACCTTCTGATTTAGGCCTTTTGAAACAGCCACATAACTTGCTCA
ACCTCAACGTCCAAAACCCAATTCTCAATTTCCACCCACTTCTTCAAGCCCCGCCCAAATACCCGCTTCCAGATTCGCCCAATATTCTTGGCACCACAAA
ACCACAACAAGGTTCTTTAGAAATTCCTTTAAATGTCTCACATCTGAAAATGGTTGTTTTAGAAGAGTTCGGGTTGAACCATGGCCATGTTAACACAAAC
CTTTCAGGCCTTCAAAACATAGTTTCATCATCATCACCCTCAGCAGATGTAACATTAGTGAGAAGAAGTGATCACAGCAACAGTCTTACAAACTGGGGAG
ATGGGGCTGGTTCAAATGAGGTTGATCATCATCATCATCAACAACAACAACAACAAGGTCTTTTAAGGTCAATTAATGGTGATTACAATAACTCAACCCA
GCGTGTTACAAATGGGAAAGTTAACTTCTTGGCTTCATCATCAGATTTTTGTGGTGACCATAAGCTGGGGCAAGAGAATGTGGCTACAAGAAGTGAAGGT
ACGATGGAATCATGGATTTGTTCTTCTGATTAG
AA sequence
>Potri.005G076600.1 pacid=42803258 polypeptide=Potri.005G076600.1.p locus=Potri.005G076600 ID=Potri.005G076600.1.v4.1 annot-version=v4.1
MDSSNSGSMQSSSGGDEEYDSSRAESISAFLNSNNNKNNPFSHVGPMPHNQPPEPDHHHHQSHHSSSSSTMFFDPFSNYFDPLAPSSSSSRSPLQSLTNP
NSLNNLDMVWSKNLRSDPNCTDLGGFISSSLPTQQFTNQTQNRTTFQSLPSHGQESATRVPGSGSVSGTNDQVSNTAGIRNPKKRSRASRRAPTTVLSTD
TTNFRAMVQEFTGIPAPPFTSSPFPRSRLDLFGTAASTLRSAVSQHLDPSPPPYLLGPFAKKFQPPPPPPFVSSGSAASSFSASMVDAIASTTATNINGT
CTNTTISNNIPLTSINYQLPSDLGLLKQPHNLLNLNVQNPILNFHPLLQAPPKYPLPDSPNILGTTKPQQGSLEIPLNVSHLKMVVLEEFGLNHGHVNTN
LSGLQNIVSSSSPSADVTLVRRSDHSNSLTNWGDGAGSNEVDHHHHQQQQQQGLLRSINGDYNNSTQRVTNGKVNFLASSSDFCGDHKLGQENVATRSEG
TMESWICSSD

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G65170 VQ motif-containing protein (.... Potri.005G076600
[exp]
0 1
AT1G71010 FAB1C FORMS APLOID AND BINUCLEATE CE... Potri.010G113700
[exp]
1.73 0.7961
AT5G44790 HMA7, RAN1 copper-exporting ATPase / resp... Potri.003G075700
[exp]
2.82 0.7799 RAN1.3
AT1G19220 ARF IAA22, ARF11, A... indole-3-acetic acid inducible... Potri.006G138500
[exp]
5.09 0.8035 Pt-NPH4.2
AT2G29970 Double Clp-N motif-containing ... Potri.009G046700
[exp]
9.21 0.7775
AT1G68130 C2H2ZnF IDD14beta, IDD1... indeterminate(ID)-domain 14 (.... Potri.010G101200
[exp]
9.38 0.7382
AT1G19220 ARF IAA22, ARF11, A... indole-3-acetic acid inducible... Potri.006G077800
[exp]
11.22 0.7664
AT4G02110 transcription coactivators (.1... Potri.014G122400
[exp]
12.48 0.6979
AT3G50700 C2H2ZnF ATIDD2 indeterminate(ID)-domain 2 (.1... Potri.002G263600
[exp]
15.58 0.7611
AT5G36930 Disease resistance protein (TI... Potri.006G284100
[exp]
17.97 0.7456
AT2G31280 bHLH bHLH155 ,CPuORF... conserved peptide upstream ope... Potri.005G222500
[exp]
19.18 0.7298

Potri.005G076600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.