Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G39740 328 / 9e-114 HCC2 homologue of copper chaperone SCO1 2, Thioredoxin superfamily protein (.1) AT3G08950 154 / 8e-45 HCC1 homologue of the copper chaperone SCO1, electron transport SCO1/SenC family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G091300 [exp] 439 / 6e-158 AT4G39740 310 / 1e-106 homologue of copper chaperone SCO1 2, Thioredoxin superfamily protein (.1) Potri.016G118700 [exp] 168 / 1e-50 AT3G08950 352 / 1e-121 homologue of the copper chaperone SCO1, electron transport SCO1/SenC family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016805 [exp] 338 / 7e-118 AT4G39740 328 / 9e-114 homologue of copper chaperone SCO1 2, Thioredoxin superfamily protein (.1) Lus10002848 [exp] 97 / 5e-25 AT3G08950 170 / 4e-53 homologue of the copper chaperone SCO1, electron transport SCO1/SenC family protein (.1) Lus10022501 [exp] 79 / 2e-18 AT4G39740 76 / 3e-17 homologue of copper chaperone SCO1 2, Thioredoxin superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0172 [poplar] [flax] Thioredoxin PF02630 [poplar] [flax] SCO1-SenC SCO1/SenC
Representative CDS sequence Show only first row Show all	>Potri.005G076700.1 pacid=42805517 polypeptide=Potri.005G076700.1.p locus=Potri.005G076700 ID=Potri.005G076700.1.v4.1 annot-version=v4.1 ATGCCCATTTCCCGCTATCTTTTCTTTTCCACCAAACAACGCCCAGGACAGTGTCTCAATCTACTCCGAAGGCTTGGTCCATCAAAGAGGGTTCAATCTA GCTGTTTTTCCAAATCAACAAACCAAAATCACTGGAAGCGTCCTGTACCGCAAGTAAAAGTAGAACTGAAGGCTCCTCGTTTCCTTGTCATTCCAGCTGC TGTACTAGGATTTGTTGGATTGGCAGCTTTTGTGCATTATAATGACGAGAGGAGAGCGGTTCCAAAAGGTCAAGGCAGTGATTGCGTCAATGTCAAGGGT CCGATTATTGGTGGTCCATTCACCCTAGTTAACACAGAGAATAAAGTAGTTACGGAGAAAGATTTTCTAGGAAATTGGGTTTTGCTGTACTTTGGCTATA CATCCTCCCCTGATATTGGACCTGAGCAACTGAAATTGATCACCAAGGCCTTAAACACATTAGAGTCTAAAGAGAATCTTAAGGTTTTGCCAATGTTTGT TACACTTGATCCTCAGCGTGACAACCCCCCACATCTTCGTGCTTACCTTGAAGAGTTTGAATCAAGAATAGTAGGATTAACAGGACCTGTTGGTGCTATA AGACAGATGGCACAAGAGTACCGTGTTTATTTCAGGAAAGTTGAAGAAGAAGGAGATGATTATCTTGTCGAGACTTCTCATAACATGTATTTGATAAATC CAAACATGGAGGTTGTAAAATGCTTCGGTGTCGAATATAACGCAGAGGAGCTTTCAGAAGCAATAGGAAAAGAATTGAAGAGAACCTCATCATAA
AA sequence Show only first row Show all	>Potri.005G076700.1 pacid=42805517 polypeptide=Potri.005G076700.1.p locus=Potri.005G076700 ID=Potri.005G076700.1.v4.1 annot-version=v4.1 MPISRYLFFSTKQRPGQCLNLLRRLGPSKRVQSSCFSKSTNQNHWKRPVPQVKVELKAPRFLVIPAAVLGFVGLAAFVHYNDERRAVPKGQGSDCVNVKG PIIGGPFTLVNTENKVVTEKDFLGNWVLLYFGYTSSPDIGPEQLKLITKALNTLESKENLKVLPMFVTLDPQRDNPPHLRAYLEEFESRIVGLTGPVGAI RQMAQEYRVYFRKVEEEGDDYLVETSHNMYLINPNMEVVKCFGVEYNAEELSEAIGKELKRTSS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G39740		HCC2	homologue of copper chaperone ...		Potri.005G076700 [exp]	0	1
AT1G63780		IMP4	Ribosomal RNA processing Brix ...		Potri.003G201100 [exp]	6.24	0.8236	Pt-IMP4.2
AT5G10920			L-Aspartase-like family protei...		Potri.002G106200 [exp]	12.72	0.7947
AT5G54930			AT hook motif-containing prote...		Potri.011G138700 [exp]	16.97	0.8197
AT5G66360		DIM1B	adenosine dimethyl transferase...		Potri.018G018900 [exp]	18.33	0.7890
AT4G25200		ATHSP23.6-MITO	mitochondrion-localized small ...		Potri.003G075900 [exp]	18.97	0.7677
AT1G22920		CSN5A, JAB1, AJ...	ARABIDOPSIS JAB1 HOMOLOG 1, CO...		Potri.006G275100 [exp]	19.62	0.7629	Pt-AJH1.2
AT5G62810		ATPEX14, PED2, ...	PEROXISOME DEFECTIVE 2, peroxi...		Potri.015G076100 [exp]	24.28	0.7876
AT3G18760			Translation elongation factor...		Potri.018G113200 [exp]	28.61	0.7639
AT5G61770		PPAN	PETER PAN-like protein (.1.2.3...		Potri.002G204900 [exp]	32.72	0.7673
AT5G66180			S-adenosyl-L-methionine-depend...		Potri.007G056800 [exp]	33.58	0.7416

Compare expression of checked genes

Potri.005G076700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.