Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G65160 618 / 0 TPR14 tetratricopeptide repeat 14, tetratricopeptide repeat (TPR)-containing protein (.1) AT5G10090 571 / 0 TPR13 tetratricopeptide repeat 13, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G78120 365 / 1e-119 TPR12 tetratricopeptide repeat 12, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G42580 340 / 6e-108 VIT, TTL3 VHI-INTERACTING TPR CONTAINING PROTEIN, tetratricopetide-repeat thioredoxin-like 3 (.1) AT3G58620 328 / 9e-104 TTL4 tetratricopetide-repeat thioredoxin-like 4 (.1) AT1G53300 318 / 2e-99 TTL1 tetratricopetide-repeat thioredoxin-like 1 (.1) AT3G14950 301 / 8e-93 TTL2 tetratricopetide-repeat thioredoxin-like 2 (.1) AT2G41520 102 / 2e-22 TPR15 tetratricopeptide repeat 15, Heat shock protein DnaJ with tetratricopeptide repeat (.1.2) AT5G12430 100 / 2e-21 TPR16 tetratricopeptide repeat 16, Heat shock protein DnaJ with tetratricopeptide repeat (.1) AT1G04190 64 / 1e-10 TPR3 tetratricopeptide repeat 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G091200 [exp] 1018 / 0 AT5G65160 570 / 0.0 tetratricopeptide repeat 14, tetratricopeptide repeat (TPR)-containing protein (.1) Potri.002G094800 [exp] 499 / 5e-171 AT5G65160 451 / 2e-152 tetratricopeptide repeat 14, tetratricopeptide repeat (TPR)-containing protein (.1) Potri.005G166300 [exp] 475 / 4e-160 AT5G65160 436 / 5e-145 tetratricopeptide repeat 14, tetratricopeptide repeat (TPR)-containing protein (.1) Potri.011G111500 [exp] 357 / 1e-114 AT1G53300 707 / 0.0 tetratricopetide-repeat thioredoxin-like 1 (.1) Potri.001G392601 [exp] 166 / 5e-45 AT1G53300 260 / 1e-79 tetratricopetide-repeat thioredoxin-like 1 (.1) Potri.009G050200 [exp] 100 / 1e-21 AT5G12430 821 / 0.0 tetratricopeptide repeat 16, Heat shock protein DnaJ with tetratricopeptide repeat (.1) Potri.001G255000 [exp] 98 / 7e-21 AT5G12430 738 / 0.0 tetratricopeptide repeat 16, Heat shock protein DnaJ with tetratricopeptide repeat (.1) Potri.016G043900 [exp] 89 / 4e-18 AT2G41520 612 / 0.0 tetratricopeptide repeat 15, Heat shock protein DnaJ with tetratricopeptide repeat (.1.2) Potri.006G047700 [exp] 89 / 4e-18 AT2G41520 640 / 0.0 tetratricopeptide repeat 15, Heat shock protein DnaJ with tetratricopeptide repeat (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022500 [exp] 643 / 0 AT5G65160 652 / 0.0 tetratricopeptide repeat 14, tetratricopeptide repeat (TPR)-containing protein (.1) Lus10016804 [exp] 630 / 0 AT5G65160 635 / 0.0 tetratricopeptide repeat 14, tetratricopeptide repeat (TPR)-containing protein (.1) Lus10028154 [exp] 338 / 3e-107 AT1G53300 754 / 0.0 tetratricopetide-repeat thioredoxin-like 1 (.1) Lus10042854 [exp] 332 / 7e-105 AT1G53300 749 / 0.0 tetratricopetide-repeat thioredoxin-like 1 (.1) Lus10031042 [exp] 86 / 4e-17 AT2G41520 505 / 4e-160 tetratricopeptide repeat 15, Heat shock protein DnaJ with tetratricopeptide repeat (.1.2) Lus10035427 [exp] 84 / 2e-16 AT2G41520 635 / 0.0 tetratricopeptide repeat 15, Heat shock protein DnaJ with tetratricopeptide repeat (.1.2) Lus10019041 [exp] 79 / 7e-15 AT5G12430 787 / 0.0 tetratricopeptide repeat 16, Heat shock protein DnaJ with tetratricopeptide repeat (.1) Lus10005022 [exp] 77 / 2e-14 AT5G12430 791 / 0.0 tetratricopeptide repeat 16, Heat shock protein DnaJ with tetratricopeptide repeat (.1) Lus10035117 [exp] 68 / 2e-12 AT4G30480 291 / 3e-99 tetratricopeptide repeat 1, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2), Tetratricopeptide repeat (TPR)-like superfamily protein (.3) Lus10031983 [exp] 69 / 4e-12 AT4G30480 222 / 9e-76 tetratricopeptide repeat 1, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2), Tetratricopeptide repeat (TPR)-like superfamily protein (.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF13414 [poplar] [flax] TPR_11 TPR repeat
Representative CDS sequence Show only first row Show all	>Potri.005G076800.1 pacid=42805132 polypeptide=Potri.005G076800.1.p locus=Potri.005G076800 ID=Potri.005G076800.1.v4.1 annot-version=v4.1 ATGGGAGACATATCGCCCGAAAAGAAACCTGCAGGTTGTGGCCTATTCTCTGTAGTTTTCGGCCGAAGAAGTTTTTGGCCAAGAAGATCAACATCTACAG GTTCAATTCCTACAGTGAATGCAGCCAATTTCACCAGAACTCCTAGCACGCCAAGGAGGCGAAGGAGTGGCTCGGATGATGCTGCATTTCTAGACAATTC GCCTAGTGTAGCAGAAGGGCAGCAAAAATCTATCACAAAGGCTCCTATGCATCCCAAGATCCCCCCTGCACAGAACCAAAACTACGGTAAAAAACTTCCC GAGGAAGCAACCAAAATATCTTCTAATCAAGGCTATGCTAATCAAAATCAAGGTTATAGTAATCAAAATGCATTTGTTAATCAAGGTAGGAGGGTTCCTA AGGAGGCAGTTGGTATTTCCGGTGAGCTCGAAAGCATGATCACTGATCACCAAAAATCTAAAGGAAGCAGCACGCTTGTCCGTGCTTCATCAAGCAATGT GATGCTTTTTGGCAATTTAGGTAACTTGAGGCAAGGAGGAGGTGGAGGAAATACAACTTCTCATAGTGTTCTTGATTACCTTCCTAAGACCGCAAGAGAA GAGGTTGTTTCACCTAATGGAAAATACCCTAATAGTGTAATGGGAAATGTAGTGAAGAAACAGAATGAAGAGAAACCAAACGTAGGTGCGCAGCCTGCTT CAGGTTCTTTATGCCGGGCTCTGTCTACTAGAATGGACCCTGAGCAACTTAAAATGATGGGTAATGAAGATTACAAGAATGGGAATTTCGCAGAGGCATT GGCTTTGTATAATGCAGCAATCTCGATTGATCCTAACAAGGCTTCTTATCGGAGCAACAGAAGCGCAGCATTAACAGCTCTTGGTAAAATTCTCGAGGCA GTTTTCGAGTGCAGAGAAGCCATTCGAATTGAACCCCATTACCATAGAGCTCATCATCGTTTAGCAAACTTGTATCTCAGATTAGGTGAGGCAGAAAAGG CTATATATCACTACAAACATGCAGGGCCAGAAGCTGACCATGTTGACATTTCAAAAGCTAAAGCTCTTCAAGCCCATCTCAACAAGTGCACCGAAGCTCG TAAACATCGAGATTGGAACACCTTGATCAAGGAGACAGCGGCTACCATATCTGCCGGCGCAGATTCAGCACCGCAAATATTTGCATTGCAAGCTGAGGCC TTGATAAAGCTTCATAGGCACCAAGAAGCAGAGGAAGCATCGATGAAGTGTCCAAATTTTGATGTGGATGCCTGCACTAAATTTTTCGGTCCACTCGGTA ATGCAAATTTGTTAGTGGTGCGAGCTCAGGTTCACATGGCTCTTGGCAGATTTGATGATGCTTTGGCTGCGGTGCAACGAGCAACTAGGCTCGATTCAAA CAACAAGGAAGCAAATATGGTGTTGAGAAAGGCTAAAGCTGTAGCTGCAGCTAGATCAAAGGGTAATCAGCTTTTTAAGGCAGCAAGATTTTATGAGGCT TGTAATACTTATAGTGAGGGACTTGAGCATGATCCCTACAACTCAGTGTTGTTATGCAATCGAGCTGCCTGCCGGTCCAAGCTTGGCCAGTATGAGAAAG CGGTAGAGGATTGCAATGCTGCTCTTACCGTCCGACCAGGTTACTCCAAGGCCAGATTAAGAAGAGCTGATTGCAATGCTAAGTTGGAAAAATGGGAAGT CTCAGTCAAAGACTATGAGATGTTGCAAAATGAAGCCCCGGGGGATGACGAAGTGAGCAGGGTCTTGATGGAGGCCAAGTCAGAGCTCAAGAAGCAGAGA GGACCAGATGCGGCAGCTTAA
AA sequence Show only first row Show all	>Potri.005G076800.1 pacid=42805132 polypeptide=Potri.005G076800.1.p locus=Potri.005G076800 ID=Potri.005G076800.1.v4.1 annot-version=v4.1 MGDISPEKKPAGCGLFSVVFGRRSFWPRRSTSTGSIPTVNAANFTRTPSTPRRRRSGSDDAAFLDNSPSVAEGQQKSITKAPMHPKIPPAQNQNYGKKLP EEATKISSNQGYANQNQGYSNQNAFVNQGRRVPKEAVGISGELESMITDHQKSKGSSTLVRASSSNVMLFGNLGNLRQGGGGGNTTSHSVLDYLPKTARE EVVSPNGKYPNSVMGNVVKKQNEEKPNVGAQPASGSLCRALSTRMDPEQLKMMGNEDYKNGNFAEALALYNAAISIDPNKASYRSNRSAALTALGKILEA VFECREAIRIEPHYHRAHHRLANLYLRLGEAEKAIYHYKHAGPEADHVDISKAKALQAHLNKCTEARKHRDWNTLIKETAATISAGADSAPQIFALQAEA LIKLHRHQEAEEASMKCPNFDVDACTKFFGPLGNANLLVVRAQVHMALGRFDDALAAVQRATRLDSNNKEANMVLRKAKAVAAARSKGNQLFKAARFYEA CNTYSEGLEHDPYNSVLLCNRAACRSKLGQYEKAVEDCNAALTVRPGYSKARLRRADCNAKLEKWEVSVKDYEMLQNEAPGDDEVSRVLMEAKSELKKQR GPDAAA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G65160		TPR14	tetratricopeptide repeat 14, t...		Potri.005G076800 [exp]	0	1
AT1G06920	OFP	ATOFP4, OFP4	ARABIDOPSIS THALIANA OVATE FAM...		Potri.019G128500 [exp]	2.00	0.8735
AT5G14040		PHT3;1	phosphate transporter 3;1 (.1)		Potri.012G105100 [exp]	4.12	0.8113	PtrPht3_3
AT4G12540			unknown protein		Potri.013G040800 [exp]	7.87	0.8595
AT4G30860		SDG4, ASHR3	ASH1-related 3, SET domain gro...		Potri.018G102100 [exp]	12.00	0.8361
AT3G19184	B3		AP2/B3-like transcriptional fa...		Potri.009G103100 [exp]	12.24	0.8301
AT5G42700	B3		AP2/B3-like transcriptional fa...		Potri.014G031600 [exp]	14.14	0.8486
AT5G57290			60S acidic ribosomal protein f...		Potri.009G032600 [exp]	21.21	0.8576
AT3G58650			unknown protein		Potri.010G140900 [exp]	22.95	0.7905
AT3G26400		EIF4B1	eukaryotic translation initiat...		Potri.002G198700 [exp]	22.97	0.8409
AT2G25620		AtDBP1	DNA-binding protein phosphatas...		Potri.018G033000 [exp]	23.51	0.7616

Compare expression of checked genes

Potri.005G076800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.