Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G39730 217 / 6e-73 Lipase/lipooxygenase, PLAT/LH2 family protein (.1) AT2G22170 216 / 1e-72 Lipase/lipooxygenase, PLAT/LH2 family protein (.1) AT5G65158 142 / 2e-44 Lipase/lipooxygenase, PLAT/LH2 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G091000 [exp] 271 / 1e-94 AT2G22170 216 / 1e-72 Lipase/lipooxygenase, PLAT/LH2 family protein (.1) Potri.005G076900 [exp] 260 / 4e-90 AT2G22170 214 / 6e-72 Lipase/lipooxygenase, PLAT/LH2 family protein (.1) Potri.007G091100 [exp] 238 / 1e-81 AT4G39730 200 / 2e-66 Lipase/lipooxygenase, PLAT/LH2 family protein (.1) Potri.003G107100 [exp] 171 / 7e-55 AT4G39730 166 / 1e-52 Lipase/lipooxygenase, PLAT/LH2 family protein (.1) Potri.010G214400 [exp] 42 / 6e-05 AT5G62200 93 / 7e-24 Embryo-specific protein 3, (ATS3) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037491 [exp] 212 / 1e-70 AT2G22170 221 / 3e-74 Lipase/lipooxygenase, PLAT/LH2 family protein (.1) Lus10006497 [exp] 211 / 2e-70 AT2G22170 219 / 1e-73 Lipase/lipooxygenase, PLAT/LH2 family protein (.1) Lus10009020 [exp] 171 / 1e-54 AT2G22170 186 / 2e-60 Lipase/lipooxygenase, PLAT/LH2 family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0321 [poplar] [flax] PLAT PF01477 [poplar] [flax] PLAT PLAT/LH2 domain
Representative CDS sequence Show only first row Show all	>Potri.005G077000.1 pacid=42804115 polypeptide=Potri.005G077000.1.p locus=Potri.005G077000 ID=Potri.005G077000.1.v4.1 annot-version=v4.1 ATGTCACTCAACCCCCTCCTCCTCTCTCTCCTCCTCCTCTCCGCCTCCACCATCGCCTTTTCTGATGAAGATTGTGTATACACTCTGTACATAAGAACAG GGTTCATCATCAAAGGTGGCACGGACTCTATCATAAGCGTGAGACTATATGACATGTATGGTGACTACGTGGGCGTCTCCAATATTGAAGCATGGGGAGG GTTAATGGAGCCAGGCCACGACTACTTTGAGAGGGGCAATCTGGACATTTTCAGTGGGAGAGCACCATGTTTGAGTTCACCTGCGTGCGCCTTGAACTTG ACCTCTGATGGGTCAGGCTCTGGCCATGGCTGGTACGTTAACTACGTGGAGGTGACTACCACTGGGGTCCATGCGACTTGTTCACAGATGAAGTTTACTA TTGAGCAGTGGCTGGCTCTTGATACTTCACCTTACGAGTTAACTGCTGTTAGGAATTATTGTGATTATTATCGGGCTAAAAAATCTGCTGCTTTAAGTTC TTCCATGTGA
AA sequence Show only first row Show all	>Potri.005G077000.1 pacid=42804115 polypeptide=Potri.005G077000.1.p locus=Potri.005G077000 ID=Potri.005G077000.1.v4.1 annot-version=v4.1 MSLNPLLLSLLLLSASTIAFSDEDCVYTLYIRTGFIIKGGTDSIISVRLYDMYGDYVGVSNIEAWGGLMEPGHDYFERGNLDIFSGRAPCLSSPACALNL TSDGSGSGHGWYVNYVEVTTTGVHATCSQMKFTIEQWLALDTSPYELTAVRNYCDYYRAKKSAALSSSM

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G39730			Lipase/lipooxygenase, PLAT/LH2...		Potri.005G077000 [exp]	0	1
AT1G07970			unknown protein		Potri.009G014900 [exp]	9.89	0.6905
AT2G34520		RPS14	mitochondrial ribosomal protei...		Potri.001G424950 [exp]	33.94	0.6223
AT4G27950	AP2_ERF	CRF4	cytokinin response factor 4 (....		Potri.012G032900 [exp]	37.66	0.5936
AT3G49910			Translation protein SH3-like f...		Potri.007G085200 [exp]	43.24	0.6378	Pt-RPL26.2
AT5G04520			Protein of unknown function DU...		Potri.010G233000 [exp]	45.35	0.6329
AT3G15200			Tetratricopeptide repeat (TPR)...		Potri.011G115500 [exp]	48.29	0.5838
AT1G09640			Translation elongation factor ...		Potri.013G103100 [exp]	57.70	0.6198
AT2G18670			RING/U-box superfamily protein...		Potri.006G175700 [exp]	59.70	0.6131
AT5G16320		FRL1	FRIGIDA like 1 (.1)		Potri.002G206200 [exp]	61.96	0.5614	Pt-FRL1.1
AT2G37500			arginine biosynthesis protein ...		Potri.012G115900 [exp]	65.19	0.5925

Compare expression of checked genes

Potri.005G077000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.