Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G10110 150 / 2e-42 unknown protein AT5G65120 144 / 2e-40 unknown protein AT5G05240 42 / 0.0005 Uncharacterised conserved protein (UCP030365) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G090500 [exp] 548 / 0 AT5G65120 176 / 2e-52 unknown protein Potri.019G058200 [exp] 43 / 0.0003 AT5G05240 301 / 2e-95 Uncharacterised conserved protein (UCP030365) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022498 [exp] 245 / 1e-78 AT5G10110 164 / 7e-48 unknown protein Lus10016802 [exp] 239 / 1e-76 AT5G65120 160 / 2e-46 unknown protein Lus10000581 [exp] 104 / 1e-27 AT5G65120 88 / 3e-22 unknown protein Lus10034236 [exp] 49 / 4e-06 AT5G05240 312 / 9e-100 Uncharacterised conserved protein (UCP030365) (.1) Lus10029030 [exp] 47 / 1e-05 AT5G05240 313 / 4e-100 Uncharacterised conserved protein (UCP030365) (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.005G077400.3 pacid=42803215 polypeptide=Potri.005G077400.3.p locus=Potri.005G077400 ID=Potri.005G077400.3.v4.1 annot-version=v4.1 ATGAGTGGAGATAATTTCACTTCCAAACCGCGTGCCGCTTTGGGGGATGTGACCAATTTGCCGGCAAAAGGGGTGTTTTCATTGATTTCGGGTGATTTGG GGCTTAAATCTAGAGATGGGTATGGTAAGAACGTGGATAATGGGGATTCAGGTTCTGCAAAACAAGTTTGTTTAGGAGTTGAAGATTTGGTGAAAGAGAA ATGTGGTGGTATTGAGAAAGGTTGCAATTCGTTGACTACTAGCTGTGAGATTAATGTTTTAGAGGAGAATGTAGCTGGTGTGTCTGTTGTCGCAGATAGG CCTAGTGATACTAAGGAAACGTCTAATTTGATAGATGGCTGTATTGATCTTGTTAAGAGTGGCGGTGCAGGTACACACAGTATTGGGGAAATTAGTTGTG CATCTAGTGGTTCAGTGCATACGAGCTCTGGGCCGTGCACAAAAGATAGTGATGACGAAGGGAAATTCACCTCCAATGTTATGCTGATCAATCCAGTTGG TGAAGCGTTAGTTGGTGGTGCTTCTGCAAATGATGACAATGATTCTGGAATTGGTAGGTTAGCTAGAGAAAGACGTGGGCCTGTTGGGTGGTCGAGGTTG CCCACTTCACAGGGTTTGAAATCGTTTGAGTCGGAAAAGTGCACAACTCTCAAGGGTGATGTTTGTGCCAATCTGAATGCAGGTGCTGACATGCTCAAAG CTTGCTCCTGTTCTTTTTGCTTGAAAGCTGCTTGTATTTGGTCGGACCTATATTACCAGGACATTAAAGGCCGACAATCTGCATTGAGGAAGAGTCAGAA AGAAGCGGGAATCTTGGTTAATAAATATGCTAGGGGAAAGCAGGCAGACATTCATAGCCAAGTAAACTCTAACAAATCTCTGAAATTAGTATCTGACCTC ACTGATCTGTGGAGGTCCCACTTTCGACACATGGAGGATATGTTTGCTAATGAAAGCAGCCAACTTCAAGCTGGATACGTGACACTGAAAGATTTGAGGG ACAGCTGCAAGATGGATCTAGAGATGGTCACTGGGATGCCTTCGGACACACTTTAG
AA sequence Show only first row Show all	>Potri.005G077400.3 pacid=42803215 polypeptide=Potri.005G077400.3.p locus=Potri.005G077400 ID=Potri.005G077400.3.v4.1 annot-version=v4.1 MSGDNFTSKPRAALGDVTNLPAKGVFSLISGDLGLKSRDGYGKNVDNGDSGSAKQVCLGVEDLVKEKCGGIEKGCNSLTTSCEINVLEENVAGVSVVADR PSDTKETSNLIDGCIDLVKSGGAGTHSIGEISCASSGSVHTSSGPCTKDSDDEGKFTSNVMLINPVGEALVGGASANDDNDSGIGRLARERRGPVGWSRL PTSQGLKSFESEKCTTLKGDVCANLNAGADMLKACSCSFCLKAACIWSDLYYQDIKGRQSALRKSQKEAGILVNKYARGKQADIHSQVNSNKSLKLVSDL TDLWRSHFRHMEDMFANESSQLQAGYVTLKDLRDSCKMDLEMVTGMPSDTL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G10110			unknown protein		Potri.005G077400 [exp]	0	1
AT5G65360			Histone superfamily protein (....		Potri.005G233900 [exp]	2.23	0.9076
AT3G17030			Nucleic acid-binding proteins ...		Potri.010G144400 [exp]	4.12	0.8533
AT5G27670		HTA7	histone H2A 7 (.1)		Potri.013G018200 [exp]	4.89	0.8991
AT5G35360		CAC2	acetyl Co-enzyme a carboxylase...		Potri.018G146300 [exp]	9.16	0.8415	ACCC.1
AT3G52630			Nucleic acid-binding, OB-fold-...		Potri.006G211900 [exp]	9.69	0.8253
AT5G05510			Mad3/BUB1 homology region 1 (....		Potri.008G071900 [exp]	9.94	0.8681
AT1G08880		HTA5 ,G-H2AX ,G...	histone H2A 5, gamma histone v...		Potri.004G031300 [exp]	10.09	0.8926
AT5G27670		HTA7	histone H2A 7 (.1)		Potri.005G026500 [exp]	13.03	0.8882	HTA914
AT1G53140		DRP5A	Dynamin related protein 5A (.1...		Potri.011G118500 [exp]	13.71	0.8892
AT5G65360			Histone superfamily protein (....		Potri.014G096900 [exp]	14.07	0.8784	HTR906

Compare expression of checked genes

Potri.005G077400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.