Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G47650 322 / 1e-110 ATNUDX2, ATNUDT2 ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 2, nudix hydrolase homolog 2 (.1) AT4G12720 318 / 7e-109 ATNUDX7, GFG1, AtNUDT7, NUDT7 GROWTH FACTOR GENE 1, Arabidopsis thaliana Nudix hydrolase homolog 7, MutT/nudix family protein (.1.2.3.4) AT2G04450 295 / 2e-99 ATNUDX6, ATNUDT6 nucleoside diphosphates linked to some moiety X 6, Arabidopsis thaliana nucleoside diphosphate linked to some moiety X 6, nudix hydrolase homolog 6 (.1) AT4G25434 292 / 1e-98 ATNUDT10 nudix hydrolase homolog 10 (.1.2) AT5G47240 271 / 4e-89 ATNUDT8 nudix hydrolase homolog 8 (.1) AT2G04430 269 / 4e-89 ATNUDT5 nudix hydrolase homolog 5 (.1) AT2G04440 148 / 3e-43 MutT/nudix family protein (.1) AT3G10620 44 / 8e-05 ATNUDX26 nudix hydrolase homolog 26 (.1) AT5G06340 40 / 0.0009 ATNUDX27 nudix hydrolase homolog 27 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G106100 [exp] 393 / 4e-138 AT5G47650 332 / 9e-115 ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 2, nudix hydrolase homolog 2 (.1) Potri.001G127700 [exp] 387 / 7e-136 AT5G47650 323 / 1e-111 ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 2, nudix hydrolase homolog 2 (.1) Potri.014G168400 [exp] 389 / 2e-135 AT5G47650 331 / 2e-113 ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 2, nudix hydrolase homolog 2 (.1) Potri.006G005400 [exp] 346 / 7e-119 AT5G47650 347 / 7e-120 ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 2, nudix hydrolase homolog 2 (.1) Potri.016G006000 [exp] 338 / 9e-116 AT5G47650 352 / 3e-122 ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 2, nudix hydrolase homolog 2 (.1) Potri.001G368000 [exp] 331 / 8e-114 AT5G47650 342 / 6e-119 ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 2, nudix hydrolase homolog 2 (.1) Potri.003G080400 [exp] 256 / 2e-83 AT5G47240 401 / 1e-139 nudix hydrolase homolog 8 (.1) Potri.001G154300 [exp] 254 / 2e-82 AT5G47240 416 / 2e-145 nudix hydrolase homolog 8 (.1) Potri.018G069100 [exp] 251 / 9e-82 AT5G47240 316 / 3e-106 nudix hydrolase homolog 8 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012319 [exp] 331 / 9e-114 AT5G47650 310 / 4e-106 ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 2, nudix hydrolase homolog 2 (.1) Lus10039079 [exp] 333 / 1e-113 AT5G47650 345 / 3e-119 ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 2, nudix hydrolase homolog 2 (.1) Lus10038780 [exp] 332 / 4e-113 AT5G47650 345 / 1e-118 ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 2, nudix hydrolase homolog 2 (.1) Lus10006365 [exp] 325 / 5e-111 AT4G12720 300 / 1e-101 GROWTH FACTOR GENE 1, Arabidopsis thaliana Nudix hydrolase homolog 7, MutT/nudix family protein (.1.2.3.4) Lus10012320 [exp] 308 / 9e-105 AT5G47650 282 / 2e-95 ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 2, nudix hydrolase homolog 2 (.1) Lus10006366 [exp] 308 / 1e-104 AT5G47650 281 / 4e-95 ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 2, nudix hydrolase homolog 2 (.1) Lus10004371 [exp] 260 / 8e-82 AT5G47240 410 / 2e-139 nudix hydrolase homolog 8 (.1) Lus10040169 [exp] 251 / 3e-81 AT5G47240 409 / 7e-143 nudix hydrolase homolog 8 (.1) Lus10018988 [exp] 47 / 6e-06 AT3G10620 288 / 8e-100 nudix hydrolase homolog 26 (.1) Lus10021278 [exp] 45 / 2e-05 AT5G06340 251 / 9e-85 nudix hydrolase homolog 27 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0261 [poplar] [flax] NUDIX PF00293 [poplar] [flax] NUDIX NUDIX domain
Representative CDS sequence Show only first row Show all	>Potri.005G077500.5 pacid=42803191 polypeptide=Potri.005G077500.5.p locus=Potri.005G077500 ID=Potri.005G077500.5.v4.1 annot-version=v4.1 ATGCAGCAGATCTATGCTTTGCCTTTTTTCATCTTGCCAGGAACTTACTTTCCACTTTTCTGTACTGAATCGACGTTTGCAGCTCTGGTTTCTACTTGTT ATAGACTCCCAATCTCAAGAAGAAATATGTCGTCTCCCCCAACCAGTGTATTGAAGGGACAGACAGCACTACCTACAGATAAAGTTCAACAGATTGGGCT ACTTAATGCAGTTAATGATAAATATGGAGGAGTTGTGGTAGATATGAAGGAACCCATGGACTTTCACATCTATGTTCCTTTGCTTAGAGCTTCGATATCC CAATGGAGGCAACAGGGGAAGAAGGGTGTTTGGATCAAATTGCCTATTCAACAAGCTAACCTTGTTGAACCTACAGTTAAGGAGGGTTTTAGGTACCACC ATGCTGAATCAAATTACTTGATGCTGGTCTATTGGATTCCTGACAGTCCTGATACTCTTCCTGCAAATGCTTCACATATAGTTGGCATTGGTGCCTTTGT TATGAACAATAAGAGAGAGGTGCTGGTAGTTAAGGAGAAACATGGATACTTCAAAGGTAAAGATGCATGGAAGTTTCCTACAGGCGTTGTTAATCAGGGT GAGGATATTTGTGCGGCTGCAATTCGAGAAGTAAAAGAAGAGACAGGAATTGACACAGAATTTATGGAAATTTTAGCATTCAACCAAACCCACCAGCAAT TCCTTGGAAAATCAGATTTATTTTTTGTTTGCATGTTACAACCACTCTCCTTTGACATCACAAAACAAGATTCAGAGATTAAGGCAGCCCAGTGGATTCC AATCGATGAGTATGTGAACCAAACTTACAACCGGGAACACAAGCCATTCGAATATGTTGCCAAGATATGCTTAACTAAGTCACAGAGTAACTATGGTGGA TTTTCAGCAGTGCATACACTAACATCATCTGGCAAACAGCCCTATTTGTACTTCAATGGGCAAGATTTCAAACCGTGA
AA sequence Show only first row Show all	>Potri.005G077500.5 pacid=42803191 polypeptide=Potri.005G077500.5.p locus=Potri.005G077500 ID=Potri.005G077500.5.v4.1 annot-version=v4.1 MQQIYALPFFILPGTYFPLFCTESTFAALVSTCYRLPISRRNMSSPPTSVLKGQTALPTDKVQQIGLLNAVNDKYGGVVVDMKEPMDFHIYVPLLRASIS QWRQQGKKGVWIKLPIQQANLVEPTVKEGFRYHHAESNYLMLVYWIPDSPDTLPANASHIVGIGAFVMNNKREVLVVKEKHGYFKGKDAWKFPTGVVNQG EDICAAAIREVKEETGIDTEFMEILAFNQTHQQFLGKSDLFFVCMLQPLSFDITKQDSEIKAAQWIPIDEYVNQTYNREHKPFEYVAKICLTKSQSNYGG FSAVHTLTSSGKQPYLYFNGQDFKP

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G47650		ATNUDX2, ATNUDT...	ARABIDOPSIS THALIANA NUDIX HYD...		Potri.005G077500 [exp]	0	1
AT1G76990		ACR3	ACT domain repeat 3 (.1.2.3.4....		Potri.005G185600 [exp]	1.00	0.8793	Pt-ACR3.2
AT2G17020			F-box/RNI-like superfamily pro...		Potri.004G179571 [exp]	2.44	0.8507
AT4G09760			Protein kinase superfamily pro...		Potri.002G063700 [exp]	3.00	0.8227
AT5G36930			Disease resistance protein (TI...		Potri.019G001600 [exp]	3.46	0.8395
AT2G32080		PUR ALPHA-1, PU...	purin-rich alpha 1 (.1.2)		Potri.003G224000 [exp]	3.87	0.8327
AT4G03250	HD		Homeodomain-like superfamily p...		Potri.009G071700 [exp]	4.89	0.8312
AT1G67940		ABCI17, AtSTAR1...	ARABIDOPSIS THALIANA NON-INTRI...		Potri.018G132000 [exp]	6.00	0.8108
AT1G68020		ATTPS6	TREHALOSE -6-PHOSPHATASE SYNTH...		Potri.008G136500 [exp]	7.93	0.8295
AT3G54320	AP2_ERF	ATWRI1, ASML1, ...	WRINKLED 1, WRINKLED, ACTIVATO...		Potri.010G247200 [exp]	8.00	0.8386
AT1G07650			Leucine-rich repeat transmembr...		Potri.018G135901 [exp]	8.71	0.7943

Compare expression of checked genes

Potri.005G077500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.