Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G65090 666 / 0 DER4, MRH3, BST1 DEFORMED ROOT HAIRS 4, BRISTLED 1, DNAse I-like superfamily protein (.1.2) AT5G04980 482 / 7e-167 DNAse I-like superfamily protein (.1.2) AT3G63240 415 / 1e-139 DNAse I-like superfamily protein (.1) AT1G05470 343 / 1e-110 CVP2 COTYLEDON VASCULAR PATTERN 2, DNAse I-like superfamily protein (.1) AT2G32010 340 / 6e-110 CVL1 CVP2 like 1 (.1.2) AT2G37440 314 / 2e-102 DNAse I-like superfamily protein (.1.2) AT1G34120 320 / 6e-102 AT5PTASE1, ATIP5PI, AT5P1, IP5PI MYO-INOSITOL POLYPHOSPHATE 5-PHOSPHATASE 1, inositol polyphosphate 5-phosphatase I (.1.2.3) AT2G01900 261 / 2e-81 DNAse I-like superfamily protein (.1) AT1G71710 254 / 2e-76 DNAse I-like superfamily protein (.1.2) AT4G18010 249 / 5e-75 AT5PTASE2, IP5PII INOSITOL\(1,4,5\)P3 5-PHOSPHATASE II, myo-inositol polyphosphate 5-phosphatase 2 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G090200 [exp] 947 / 0 AT5G65090 671 / 0.0 DEFORMED ROOT HAIRS 4, BRISTLED 1, DNAse I-like superfamily protein (.1.2) Potri.010G247800 [exp] 517 / 3e-180 AT5G04980 552 / 0.0 DNAse I-like superfamily protein (.1.2) Potri.008G011000 [exp] 508 / 3e-177 AT5G04980 534 / 0.0 DNAse I-like superfamily protein (.1.2) Potri.002G050000 [exp] 445 / 6e-151 AT3G63240 785 / 0.0 DNAse I-like superfamily protein (.1) Potri.005G212700 [exp] 439 / 1e-148 AT3G63240 778 / 0.0 DNAse I-like superfamily protein (.1) Potri.010G084300 [exp] 417 / 4e-140 AT2G32010 865 / 0.0 CVP2 like 1 (.1.2) Potri.008G155700 [exp] 414 / 1e-138 AT2G32010 914 / 0.0 CVP2 like 1 (.1.2) Potri.015G032200 [exp] 277 / 6e-87 AT2G01900 476 / 1e-166 DNAse I-like superfamily protein (.1) Potri.012G041600 [exp] 271 / 6e-85 AT2G01900 472 / 3e-165 DNAse I-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024041 [exp] 554 / 1e-180 AT4G10320 1819 / 0.0 tRNA synthetase class I (I, L, M and V) family protein (.1) Lus10041708 [exp] 495 / 6e-171 AT5G65090 469 / 2e-161 DEFORMED ROOT HAIRS 4, BRISTLED 1, DNAse I-like superfamily protein (.1.2) Lus10033398 [exp] 492 / 6e-170 AT5G04980 540 / 0.0 DNAse I-like superfamily protein (.1.2) Lus10034857 [exp] 486 / 3e-168 AT5G04980 530 / 0.0 DNAse I-like superfamily protein (.1.2) Lus10028884 [exp] 462 / 4e-159 AT5G04980 526 / 0.0 DNAse I-like superfamily protein (.1.2) Lus10025305 [exp] 399 / 8e-134 AT2G37440 481 / 8e-167 DNAse I-like superfamily protein (.1.2) Lus10006904 [exp] 399 / 5e-133 AT3G63240 711 / 0.0 DNAse I-like superfamily protein (.1) Lus10008934 [exp] 378 / 3e-129 AT5G04980 395 / 3e-138 DNAse I-like superfamily protein (.1.2) Lus10024427 [exp] 401 / 1e-127 AT2G37440 489 / 2e-162 DNAse I-like superfamily protein (.1.2) Lus10006597 [exp] 344 / 4e-114 AT2G32010 581 / 0.0 CVP2 like 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0530 [poplar] [flax] DNase_I-like PF03372 [poplar] [flax] Exo_endo_phos Endonuclease/Exonuclease/phosphatase family
Representative CDS sequence Show only first row Show all	>Potri.005G078000.2 pacid=42805377 polypeptide=Potri.005G078000.2.p locus=Potri.005G078000 ID=Potri.005G078000.2.v4.1 annot-version=v4.1 ATGACCAAAGCCAAAAGCCCTAGCAATGCCACCTCTGATGATTCTGCCAAGAATGAAAAGAAAAAGAAGTCTATTATTCCAAAGATTTTCAGTTCAAAAA GAAACAATAGAAGTGGTTCCAATGATGATGATATTCTTGGATCAGAAGGCAGTGGAGTTTCTCTTGATGTGGATAAGAAGATTGCCGCAAGGAAGAAAAC ATTCACAGAGGCATCCCCCTTGATGAGAAAAAGTTTCTCAGAACGACGGAACAGTTCCGGGAGTGAAGGCCTAAATTTATCAAACTTTGATCAATCTATG GCACCAGCAACAGAAATTAAAGAACTCAGGATATGTGTTGCAACATGGAACGTGGGAGGCAAGACACCCGACCCTGGCCTCAACCTTGAAGATTTCTTGC AGGTTGAAGATTCTGCTGATATTTATGTCTGCGGGTTTCAGGAAATTGTTCCACTCAATGCTGGAAACGTACTGGTGATTGAAGATAATGAGCCTGCAGC AAGATGGCTAGCTCTTATAAGCCAAGCACTTAACAAACCACTGCATGATTTCACGAACTATTATTCCGACTCAAGCCATGGTTCAAGAGGCCTCAACAGC AATAAAGACTCGAAATCACATAACTTCTTTCATAAGCCTTCTCTGAAAGTGCTTAGCAAAAATTACAGGGCAGATAGTAGCCTACTCAAGATCTGCAATT GTCACGAGGAGTCCCAACCTAGAGAGAGGCAGAGAACAAGAAAACTTAGCGACCCCATCAACAAACTAGAATCAGCAAAGGAACTTCATCGTCGTCCAGA AAGCTGTGCCGATGACATGCTTTATATTCCTGACATGCCTACCTCACCTTCCTCACCGACCAACAGGACCTATAACCTTATTGCAAGCAAGCAAATGGTT GGAATTTTTCTTACAGTGTGGGTTAGAAAGGAGTTGGTGCCTCACATTGGTCATCTCAGGGTAGATTCTGTTTGTAGAGGAATAATGGGTCGTCTTGGCA ACAAGGGATGTATATCAATAAGCATGTCATTGCACCAAACGAGCTTTTGCTTCGTGTGCAGTCACCTGGCTTCTGGGGAGAAGGAAGGCGATGAACTAAA GAGGAACGCTGATGTAGCTGAGATCCTCAAGAGCACACAATTCCCCAAGATTTGCAAGCATAGACCTCGTCGAGCCCCTGAGAGAATAGTTGATCATGAC CGTATAATTTGGCTAGGAGATTTAAATTATCGAGTAGCTTTGAGTTATGAGGAAACAAAGGTTCTGTTGGAGGATAATGACTGGGACACCCTGCTGGAGA AGGATCAGTTGAATATTGAAAGAGAAGCAGGGAGAGTATTCGAGGGTTTCAAAGAAGGACAGATCTTGTTCGCTCCTACTTACAAGTACACACAGAACTC AGATTCTTATGCTGGAGAAACTGTTAAATCCAGAAGGAAACGTCGAACACCAGCATGGTGCGATAGGATATTATGGCGTGGTGATGGCATTGAGCAGTTG TCCTATGTCCGCCGCGAGTCAAGATTTTCCGATCACAGACCGGTTTGTGCTGTCTTCGCAGCAGAGGTTGAAATGAGGAACAAAACCACTAACAGATTCA GGAAAGGTTACTCCTGTGCGGCTGCAAAACTGGAACTTGATAGCTGCATACCCCAAAGGCATAGCTTATATGAATTCTAA
AA sequence Show only first row Show all	>Potri.005G078000.2 pacid=42805377 polypeptide=Potri.005G078000.2.p locus=Potri.005G078000 ID=Potri.005G078000.2.v4.1 annot-version=v4.1 MTKAKSPSNATSDDSAKNEKKKKSIIPKIFSSKRNNRSGSNDDDILGSEGSGVSLDVDKKIAARKKTFTEASPLMRKSFSERRNSSGSEGLNLSNFDQSM APATEIKELRICVATWNVGGKTPDPGLNLEDFLQVEDSADIYVCGFQEIVPLNAGNVLVIEDNEPAARWLALISQALNKPLHDFTNYYSDSSHGSRGLNS NKDSKSHNFFHKPSLKVLSKNYRADSSLLKICNCHEESQPRERQRTRKLSDPINKLESAKELHRRPESCADDMLYIPDMPTSPSSPTNRTYNLIASKQMV GIFLTVWVRKELVPHIGHLRVDSVCRGIMGRLGNKGCISISMSLHQTSFCFVCSHLASGEKEGDELKRNADVAEILKSTQFPKICKHRPRRAPERIVDHD RIIWLGDLNYRVALSYEETKVLLEDNDWDTLLEKDQLNIEREAGRVFEGFKEGQILFAPTYKYTQNSDSYAGETVKSRRKRRTPAWCDRILWRGDGIEQL SYVRRESRFSDHRPVCAVFAAEVEMRNKTTNRFRKGYSCAAAKLELDSCIPQRHSLYEF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G65090		DER4, MRH3, BST...	DEFORMED ROOT HAIRS 4, BRISTLE...		Potri.005G078000 [exp]	0	1
AT5G09520		PELPK2	Pro-Glu-Leu|Ile|Val-Pro-Lys 2,...		Potri.018G146200 [exp]	3.74	0.7961
AT4G03540			Uncharacterised protein family...		Potri.011G052100 [exp]	9.21	0.7657
AT3G47340		AT-ASN1, DIN6, ...	DARK INDUCIBLE 6, ARABIDOPSIS ...		Potri.009G072900 [exp]	14.42	0.7959	Pt-AS1.3
AT3G61220		SDR1	short-chain dehydrogenase/redu...		Potri.002G156300 [exp]	15.68	0.7835
AT3G22060			Receptor-like protein kinase-r...		Potri.017G040215 [exp]	29.69	0.6770
					Potri.012G115400 [exp]	30.98	0.7171
AT1G06520		ATGPAT1, GPAT1	glycerol-3-phosphate acyltrans...		Potri.005G202200 [exp]	42.08	0.7202
AT1G11380			PLAC8 family protein (.1)		Potri.011G040100 [exp]	42.23	0.7268
AT1G31130			unknown protein		Potri.010G250300 [exp]	46.09	0.7044
AT2G27230	bHLH	LHW, bHLH156	LONESOME HIGHWAY, transcriptio...		Potri.001G216900 [exp]	49.83	0.7003

Compare expression of checked genes

Potri.005G078000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.