Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G089400 [exp] 832 / 0 ND / Potri.005G167800 [exp] 614 / 0 ND / Potri.007G010000 [exp] 461 / 2e-158 ND / Potri.002G093000 [exp] 254 / 1e-81 ND /
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041110 [exp] 584 / 0 ND / Lus10036436 [exp] 554 / 0 ND /
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [poplar] [flax] Glyco_hydro_tim PF00150 [poplar] [flax] Cellulase Cellulase (glycosyl hydrolase family 5)
Representative CDS sequence Show only first row Show all	>Potri.005G078500.1 pacid=42803548 polypeptide=Potri.005G078500.1.p locus=Potri.005G078500 ID=Potri.005G078500.1.v4.1 annot-version=v4.1 ATGGCTTACTATTTACTAGTCTTTCCCTTACTCTTGCTTTTGTGTGCTCCATCTCCTTCTCTTGCACAGCCGTTTAAAGCTGTGAATTTAGGAAATTGGC TCGTTAATGAAGGGTGGATGGATCCTTCTCTCTATGATGGGATGCCCAACAATGATCTCCTGGATGGAACTCAAGTGCGGTTCTTCTCCACAAGGCTACA GAAGTATCTTTGCTCAGAAAATGGAGGTGGAACCATTCTTGTAGCCAATCGGCCCTCAGCCTCTGACTGGGAAACTTTCAGATTGTGGAGGATCAATGAG ACATATTTCAACTTTAGGGTGTTCAACAAGCAGTTTGTGGGGCTAGAGGATCAAGGAAACAAAGTAACAGCATTTTCAGATACTGCTGGAAACCGAGAAA CATTCCAGATCATAAGGAAAAATGATGATCGGAGTATAGTTCGCCTCCAAGCATCAAATGGACAATTCCTTCAGGCAATATCAGAGACACTGGTAACTGC AGATTATGTAGGCTCAGGTTGGGACGACGGTGATCCATCAGTCTTCAAAATGACTATTGTCAATCCCAACGCCATACGAGGTGAATATCAACTCACAAAT GGTTATGGTCCAGACAGAGCCCCTCAAGTCTTGCAGGATCACTGGAACTCTTACATCACTGATGAGGACTTCAGATTCATGTCAGCAAATGGTCTTAATG CTGTCAGAATTCCAGTTGGATGGTGGATCGCATGCGATCCGCCGCCTAAACCTTTTGTTAGTGGCTCTTTGAAAGCCCTAGACAATGCTTTCACATGGGC ACAGGAATACGGAATGAAGGTAATTGTTGATCTGCATGCGATTCAAGGTTCACAAAATGGCAATGGTCATAGTGGGACACGAGATGGGTACCAAGAATGG GGAGATTCCAACATTCAAGATACTGTGGCTGTCATAGATTTCCTTGCAGAGAGGTATGCCAACAATACAAGTCTTGCAGCAATCGAATTGATGAACGAGC CAATGGCCCCAGGCATCAGTCTAGACACCCTAAAGAAGTATTATCAAGCTGGATACGATGCCGTAAGGAAGTACACTCAAAATGCTTATGTGATCCTCTC CAATCGACTAGGGAACGCTGATGCAAAGGAGCTCCTTTCATTTGCAAGCAGTCTGCATTGCGTAGCCATTGATGTGCATTATTACAACCTATTCTCAGAT TCGTTCAGTAATATGAATGCGCAACAGAACATTGACTTTATCCATAATCAGCGGTCTAGTGATCTCGATACCGTGACCACTGCCAATGGTCCATCCATTT TTGTTGGGGCATGGACTGGAGAATGGGAAGTGAACGGAGCATCGATGGAAGATTATCAAAACTTTGCTAAAGCTCAAATCGAAGTCTACGGGCGTGCCCA ATTTGGATGGGCATATTGGGCTTACAAGTGTGCCGCCAACTACTGGAGTCTAAAATGGATGATCGAGAACAACTACATAAAGCTCTAG
AA sequence Show only first row Show all	>Potri.005G078500.1 pacid=42803548 polypeptide=Potri.005G078500.1.p locus=Potri.005G078500 ID=Potri.005G078500.1.v4.1 annot-version=v4.1 MAYYLLVFPLLLLLCAPSPSLAQPFKAVNLGNWLVNEGWMDPSLYDGMPNNDLLDGTQVRFFSTRLQKYLCSENGGGTILVANRPSASDWETFRLWRINE TYFNFRVFNKQFVGLEDQGNKVTAFSDTAGNRETFQIIRKNDDRSIVRLQASNGQFLQAISETLVTADYVGSGWDDGDPSVFKMTIVNPNAIRGEYQLTN GYGPDRAPQVLQDHWNSYITDEDFRFMSANGLNAVRIPVGWWIACDPPPKPFVSGSLKALDNAFTWAQEYGMKVIVDLHAIQGSQNGNGHSGTRDGYQEW GDSNIQDTVAVIDFLAERYANNTSLAAIELMNEPMAPGISLDTLKKYYQAGYDAVRKYTQNAYVILSNRLGNADAKELLSFASSLHCVAIDVHYYNLFSD SFSNMNAQQNIDFIHNQRSSDLDTVTTANGPSIFVGAWTGEWEVNGASMEDYQNFAKAQIEVYGRAQFGWAYWAYKCAANYWSLKWMIENNYIKL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
					Potri.005G078500 [exp]	0	1
AT1G13420		SST1, ATST4B	ARABIDOPSIS THALIANA SULFOTRAN...		Potri.017G100500 [exp]	2.82	0.9268
AT3G16560			Protein phosphatase 2C family ...		Potri.010G024800 [exp]	3.00	0.9216
					Potri.005G047000 [exp]	3.87	0.9327
AT1G53470		MSL4	mechanosensitive channel of sm...		Potri.005G246600 [exp]	8.30	0.8674
AT1G02170		AtMCP1b, ATMC1,...	LSD ONE LIKE 3, ARABIDOPSIS TH...		Potri.017G053000 [exp]	11.53	0.9244
AT2G23950			Leucine-rich repeat protein ki...		Potri.006G179400 [exp]	11.61	0.9134
AT1G60500		DRP4C	Dynamin related protein 4C (.1...		Potri.013G120000 [exp]	11.87	0.9264
AT5G27690			Heavy metal transport/detoxifi...		Potri.005G026100 [exp]	13.11	0.8847
AT2G27140			HSP20-like chaperones superfam...		Potri.004G191200 [exp]	14.00	0.9260
AT3G17380			TRAF-like family protein (.1)		Potri.003G103200 [exp]	14.83	0.9254

Compare expression of checked genes

Potri.005G078500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.