Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G78020 105 / 4e-29 Protein of unknown function (DUF581) (.1) AT1G22160 96 / 3e-25 Protein of unknown function (DUF581) (.1) AT4G39795 89 / 4e-23 Protein of unknown function (DUF581) (.1) AT4G17670 74 / 7e-17 Protein of unknown function (DUF581) (.1) AT5G65040 72 / 2e-16 Protein of unknown function (DUF581) (.1) AT5G49120 71 / 1e-15 Protein of unknown function (DUF581) (.1) AT5G47060 69 / 6e-15 Protein of unknown function (DUF581) (.1) AT2G44670 66 / 3e-14 Protein of unknown function (DUF581) (.1) AT1G53885 64 / 3e-13 Protein of unknown function (DUF581) (.1) AT1G53903 64 / 3e-13 Protein of unknown function (DUF581) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G089200 [exp] 244 / 4e-83 AT1G78020 120 / 8e-35 Protein of unknown function (DUF581) (.1) Potri.002G092900 [exp] 118 / 4e-34 AT1G22160 137 / 5e-42 Protein of unknown function (DUF581) (.1) Potri.005G168900 [exp] 113 / 3e-32 AT1G22160 142 / 2e-44 Protein of unknown function (DUF581) (.1) Potri.008G219800 [exp] 66 / 1e-13 AT5G49120 104 / 4e-29 Protein of unknown function (DUF581) (.1) Potri.001G148700 [exp] 64 / 4e-13 AT4G17670 142 / 5e-44 Protein of unknown function (DUF581) (.1) Potri.003G085700 [exp] 64 / 7e-13 AT4G17670 140 / 2e-43 Protein of unknown function (DUF581) (.1) Potri.010G011700 [exp] 61 / 5e-12 AT5G49120 97 / 2e-26 Protein of unknown function (DUF581) (.1) Potri.001G163400 [exp] 60 / 2e-11 AT1G53903 113 / 5e-33 Protein of unknown function (DUF581) (.1) Potri.006G139200 [exp] 61 / 3e-11 AT5G20700 139 / 2e-40 Protein of unknown function (DUF581) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019672 [exp] 105 / 4e-29 AT1G78020 100 / 2e-27 Protein of unknown function (DUF581) (.1) Lus10000693 [exp] 102 / 1e-27 AT1G78020 99 / 6e-27 Protein of unknown function (DUF581) (.1) Lus10037493 [exp] 62 / 4e-12 AT5G49120 83 / 1e-20 Protein of unknown function (DUF581) (.1) Lus10012417 [exp] 63 / 9e-12 AT3G22550 140 / 4e-38 Protein of unknown function (DUF581) (.1) Lus10019494 [exp] 58 / 3e-11 AT5G47060 95 / 8e-26 Protein of unknown function (DUF581) (.1) Lus10006499 [exp] 58 / 1e-10 AT5G49120 79 / 2e-19 Protein of unknown function (DUF581) (.1) Lus10003939 [exp] 57 / 5e-10 AT1G53903 60 / 1e-11 Protein of unknown function (DUF581) (.1) Lus10006102 [exp] 57 / 9e-10 AT3G22550 193 / 1e-60 Protein of unknown function (DUF581) (.1) Lus10010568 [exp] 57 / 1e-09 AT3G22550 187 / 2e-58 Protein of unknown function (DUF581) (.1) Lus10022060 [exp] 54 / 7e-09 AT3G63210 133 / 1e-37 MEDIATOR OF ABA-REGULATED DORMANCY 1, Protein of unknown function (DUF581) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0175 [poplar] [flax] TRASH PF04570 [poplar] [flax] zf-FLZ zinc-finger of the FCS-type, C2-C2
Representative CDS sequence Show only first row Show all	>Potri.005G078600.1 pacid=42804763 polypeptide=Potri.005G078600.1.p locus=Potri.005G078600 ID=Potri.005G078600.1.v4.1 annot-version=v4.1 ATGTCACTAGGGAAGCGTCCAAGGGGACCCATGAGAAGAACAACAAGCATGACTGGTATTGCCGTTGATCTTCCGAGCAACGTGGGCGCCGGTTCATCTG AGCCTTCTGATGATACTACCCAGAATCATCAAATGATCATCAAGGGTCTCCATGCAACTGCAGGACTCGAAGAAGGGTCTCTTGATTATCACAACAAAAA CAACATGATGGATACTTCTTGTGGTGAGAATACTAGTGGATTCTTGCACGATCAACCTTTCTTGGCCTCCGTGTTGTCACCAAGAAACCACCATAAGAGC AGTGGCTCTGGTAATCATTTTGTGGAGGATTCTCATTTCTTGCGGACCTGTGGCCTTTGTAAACGCCGGTTGGCTCCTGGGAAAGATTTATACATGTACA GGGGAGATACGGCATTCTGCAGTCAAGAGTGCAGAGCACAGCAGATGAAACAAGACGAGAGAAAAGAAAACCGCAACGTTATGATAACATCAAAGAAAGG AGAACGCCATGCATCAGCATCCACCACAAGCTCCAAGTCTTCTCGTAAAAGTGAAACTGTGGCTGCTGCTTGA
AA sequence Show only first row Show all	>Potri.005G078600.1 pacid=42804763 polypeptide=Potri.005G078600.1.p locus=Potri.005G078600 ID=Potri.005G078600.1.v4.1 annot-version=v4.1 MSLGKRPRGPMRRTTSMTGIAVDLPSNVGAGSSEPSDDTTQNHQMIIKGLHATAGLEEGSLDYHNKNNMMDTSCGENTSGFLHDQPFLASVLSPRNHHKS SGSGNHFVEDSHFLRTCGLCKRRLAPGKDLYMYRGDTAFCSQECRAQQMKQDERKENRNVMITSKKGERHASASTTSSKSSRKSETVAAA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G78020			Protein of unknown function (D...		Potri.005G078600 [exp]	0	1
AT1G67710	GARP	ARR11	response regulator 11 (.1)		Potri.008G181000 [exp]	1.00	0.8362
AT1G09530	bHLH	PIF3, POC1, PAP...	PHOTOCURRENT 1, PHYTOCHROME-AS...		Potri.013G001300 [exp]	2.44	0.8060
AT1G77920	bZIP		bZIP transcription factor fami...		Potri.005G170500 [exp]	5.00	0.7925	Pt-TGA3.2
AT1G22540			Major facilitator superfamily ...		Potri.019G079551 [exp]	8.48	0.7936
AT1G28110		SCPL45	serine carboxypeptidase-like 4...		Potri.016G034400 [exp]	9.79	0.7906
AT5G53420			CCT motif family protein (.1.2...		Potri.012G014000 [exp]	10.58	0.7527
AT4G17900			PLATZ transcription factor fam...		Potri.019G051200 [exp]	14.96	0.7793
AT4G28910		NINJA	novel interactor of JAZ (.1.2....		Potri.006G162900 [exp]	19.23	0.7713
AT1G13700		PGL1	6-phosphogluconolactonase 1 (....		Potri.008G097200 [exp]	19.74	0.7096
AT1G05065		CLE20	CLAVATA3/ESR-RELATED 20 (.1)		Potri.002G226300 [exp]	23.91	0.7255

Compare expression of checked genes

Potri.005G078600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.