Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G39810 344 / 3e-120 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) AT5G07710 273 / 3e-89 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) AT1G74390 273 / 4e-89 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1.2) AT5G61390 259 / 5e-84 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G088500 [exp] 415 / 1e-148 AT4G39810 311 / 3e-108 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Potri.015G062000 [exp] 281 / 3e-92 AT5G61390 543 / 0.0 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022503 [exp] 378 / 7e-133 AT4G39810 305 / 2e-104 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Lus10016807 [exp] 373 / 6e-131 AT4G39810 297 / 2e-101 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Lus10015719 [exp] 283 / 5e-93 AT5G61390 541 / 0.0 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Lus10019078 [exp] 278 / 5e-91 AT5G61390 528 / 0.0 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Lus10000567 [exp] 276 / 4e-90 AT5G61390 480 / 8e-167 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0219 [poplar] [flax] RNase_H PF00929 [poplar] [flax] RNase_T Exonuclease
Representative CDS sequence Show only first row Show all	>Potri.005G079100.1 pacid=42804353 polypeptide=Potri.005G079100.1.p locus=Potri.005G079100 ID=Potri.005G079100.1.v4.1 annot-version=v4.1 ATGGAGGCCTCCAGTCCTGTAAGCACACCAGAGATTGTGTTCTTCGACTTAGAAACAACGGTGCCCAATAAAGCTGGACAACGGTTCTGGGTACTGGAGT TTGGTGCAATAATAGTTTGTCCACGGAAACTTGTTGAGCTAGATAGTTATAGCACACTCATAAGACCTGAGGACTTGTCTGCTGTTGCATTGAAGTCTGG TCGATGTGATGGGATAACTCGTGAAGCTGTTGCAAATGCACCTGCATTCGAGGAAGTTGCTGACAAAATATTTACCATTTTGAACGGTAGAATATGGGCT GGACATAACATCCAAAGATTTGACTGTGTCCGAATTAAGGAGGCATTTGCAGAGATTGGTCGGCCTGCACCAATGCCTGTTGGAATGTTTGATTCTTTAG GAGTTCTGACGGAAAAATTTGGCAGAAGAGCTGGTAACATGAAGATGGCAACTTTGGCTACTTATTTTGGGCTCGGCCAGCAAAAACACAGGAGTCTTGA AGATGTGCGTATGAACCTGGAGGTCTTGAAGCATTGCGCAGCAGTTTTATTCGTGGAATCAAGCCTTCCAAGTGTAATGAATGGCAAATGGCACAACCCT TCGACAATGGTAACTCGAAGCAGAAGTAATGGAAAACTTGTGTGTAGGGAAGAAAATTGCCGAAAATCTCCTCCAACTACTCTTGGATACCAAAGAGCAG TTCCCTATACAAGGGGAAGGTTGGGAGAGATGACAGAAGGAGTGAGAAAATTGCTGTGCAAAGCCCAGGAGACAAAATCTCTTAACAACATACTCAAGCA TTCACTTTCTTTGTTCAGATGA
AA sequence Show only first row Show all	>Potri.005G079100.1 pacid=42804353 polypeptide=Potri.005G079100.1.p locus=Potri.005G079100 ID=Potri.005G079100.1.v4.1 annot-version=v4.1 MEASSPVSTPEIVFFDLETTVPNKAGQRFWVLEFGAIIVCPRKLVELDSYSTLIRPEDLSAVALKSGRCDGITREAVANAPAFEEVADKIFTILNGRIWA GHNIQRFDCVRIKEAFAEIGRPAPMPVGMFDSLGVLTEKFGRRAGNMKMATLATYFGLGQQKHRSLEDVRMNLEVLKHCAAVLFVESSLPSVMNGKWHNP STMVTRSRSNGKLVCREENCRKSPPTTLGYQRAVPYTRGRLGEMTEGVRKLLCKAQETKSLNNILKHSLSLFR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G39810			Polynucleotidyl transferase, r...		Potri.005G079100 [exp]	0	1
AT5G06850			C2 calcium/lipid-binding plant...		Potri.009G065600 [exp]	4.69	0.9148
AT5G04890		RTM2	RESTRICTED TEV MOVEMENT 2, HSP...		Potri.010G245600 [exp]	5.38	0.9231
AT1G65810			P-loop containing nucleoside t...		Potri.004G077600 [exp]	11.74	0.9145
AT5G11620			SWIM zinc finger family protei...		Potri.006G238000 [exp]	12.04	0.9065
AT5G04890		RTM2	RESTRICTED TEV MOVEMENT 2, HSP...		Potri.010G245500 [exp]	15.09	0.9048
AT3G17380			TRAF-like family protein (.1)		Potri.001G130700 [exp]	17.54	0.9117
AT5G45540			Protein of unknown function (D...		Potri.015G107300 [exp]	18.49	0.8838
AT1G65910	NAC	ANAC028	NAC domain containing protein ...		Potri.017G139500 [exp]	20.34	0.8992
AT3G17380			TRAF-like family protein (.1)		Potri.003G103200 [exp]	24.00	0.9016
AT5G42570			B-cell receptor-associated 31-...		Potri.011G089100 [exp]	25.69	0.8941

Compare expression of checked genes

Potri.005G079100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.