Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G22250 649 / 0 ATAAT, AAT, MEE17 MATERNAL EFFECT EMBRYO ARREST 17, aspartate aminotransferase (.1.2.3) AT1G77670 180 / 2e-51 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) AT1G80360 121 / 4e-30 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) AT4G28420 96 / 3e-21 Tyrosine transaminase family protein (.1.2) AT5G53970 87 / 2e-18 TAT7 tyrosine aminotransferase 7, Tyrosine transaminase family protein (.1) AT5G36160 85 / 1e-17 Tyrosine transaminase family protein (.1) AT2G24850 83 / 6e-17 TAT3 tyrosine aminotransferase 3 (.1) AT1G01480 77 / 7e-15 AT-ACC2, ACS2 1-amino-cyclopropane-1-carboxylate synthase 2 (.1.2) AT4G28410 77 / 8e-15 Tyrosine transaminase family protein (.1) AT5G51690 76 / 1e-14 ACS12 1-amino-cyclopropane-1-carboxylate synthase 12 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G088426 [exp] 814 / 0 AT2G22250 643 / 0.0 MATERNAL EFFECT EMBRYO ARREST 17, aspartate aminotransferase (.1.2.3) Potri.005G175400 [exp] 176 / 1e-49 AT1G77670 728 / 0.0 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Potri.002G086000 [exp] 171 / 1e-47 AT1G77670 726 / 0.0 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Potri.014G124100 [exp] 153 / 2e-41 AT1G77670 289 / 6e-94 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Potri.001G177000 [exp] 120 / 8e-30 AT1G80360 573 / 0.0 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Potri.017G014100 [exp] 102 / 1e-23 AT5G53970 528 / 0.0 tyrosine aminotransferase 7, Tyrosine transaminase family protein (.1) Potri.017G014000 [exp] 98 / 7e-22 AT5G53970 520 / 0.0 tyrosine aminotransferase 7, Tyrosine transaminase family protein (.1) Potri.017G013900 [exp] 96 / 3e-21 AT5G53970 521 / 0.0 tyrosine aminotransferase 7, Tyrosine transaminase family protein (.1) Potri.017G013800 [exp] 96 / 4e-21 AT5G36160 520 / 0.0 Tyrosine transaminase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023080 [exp] 734 / 0 AT2G22250 683 / 0.0 MATERNAL EFFECT EMBRYO ARREST 17, aspartate aminotransferase (.1.2.3) Lus10032388 [exp] 731 / 0 AT2G22250 681 / 0.0 MATERNAL EFFECT EMBRYO ARREST 17, aspartate aminotransferase (.1.2.3) Lus10004089 [exp] 182 / 5e-52 AT1G77670 685 / 0.0 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Lus10014710 [exp] 177 / 5e-51 AT1G77670 680 / 0.0 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Lus10018962 [exp] 151 / 1e-40 AT1G77670 289 / 2e-93 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Lus10023117 [exp] 114 / 9e-28 AT1G80360 593 / 0.0 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Lus10033659 [exp] 108 / 2e-25 AT5G36160 481 / 3e-169 Tyrosine transaminase family protein (.1) Lus10017703 [exp] 102 / 3e-23 AT2G20610 486 / 1e-170 SUPERROOT 1, ROOTY 1, ROOTY, HOOKLESS 3, ABERRANT LATERAL ROOT FORMATION 1, Tyrosine transaminase family protein (.1.2) Lus10039861 [exp] 100 / 1e-22 AT2G20610 509 / 1e-179 SUPERROOT 1, ROOTY 1, ROOTY, HOOKLESS 3, ABERRANT LATERAL ROOT FORMATION 1, Tyrosine transaminase family protein (.1.2) Lus10011479 [exp] 99 / 2e-22 AT1G80360 497 / 2e-177 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0061 [poplar] [flax] PLP_aminotran PF00155 [poplar] [flax] Aminotran_1_2 Aminotransferase class I and II
Representative CDS sequence Show only first row Show all	>Potri.005G079200.1 pacid=42802603 polypeptide=Potri.005G079200.1.p locus=Potri.005G079200 ID=Potri.005G079200.1.v4.1 annot-version=v4.1 ATGGCTGCTTCAACTTCAAGCATTTCCCGTCTTGGTTTTAGACACCACCAACCTCTCGGAACCAATCCGGGTTCCCACTCTCAACCCTCCGGATCTGTCT CTTTCCTTTCTGGGTCTCACTGTTTCTACTTCAAACCATTGGAGGCTACTAGACAATCACAGTTGTCTAGAGTAAGTGTAGTGGTGAAGGCAGAAAGTAG GTCTGAGGAGATGCAAGTCGATATTTCTTTGAGTCCAAGGGTGACTGCTGTAAAACCTTCAAAGACTGTGGCCATAACTGACCAGGCGACTGCGCTTGCA CAAGCTGGAGTCCCTGTTATTCGCCTGGCTGCTGGAGAGCCTGATTTTGATACTCCAGCTGTAATAGCAGAGGCTGGTATAAATGCTATTCGTGAAGGTC ACACAAGGTACACTCCAAATGCTGGTACACAGGAGCTTCGAGTTGCAATTTGTCAGAAGTTGAAGGAGGAGAATGGTATATCTTATAAACCTGACCAAAT TTTAGTAAGCAATGGGGCCAAGCAGAGTATATATCAAGCGATACTTGCAGTTTGCTCTCCTGGCGATGAGGTTATAATTCCAGCACCATTTTGGGTGAGT TATCCAGAAATGGCAAGGCTGGCTGATGCAACCCCGGTGATTATTCCAACATCAATCTCTGAGAATTTTCTCTTGGACCCAAAGCAACTTGAATCAAAAC TGAATGAAAAGTCAAGGCTGCTGATTCTTTGCTCTCCATCTAACCCAACAGGATCAGTTTATCCTAAGAAATTGCTTGAAGAGATTGCAAAAATTGTAGC AAAACATCCTAGGCTTCTGGTCTTGTCTGATGAGATATATGAACACATAATATATGCACCTGCTACTCACACAAGCTTTGCATCTTTGCCCGGCATGTGG GAAAGGACTTTGACAGTGAATGGATTTTCTAAGGCCTTTGCAATGACTGGTTGGAGACTTGGGTACCTTGCCGGCCCTAAGCACTTTGTTGCTGCATGTA ATAAGATACAGAGCCAGTTTACCTCAGGTGCCAGCAGCATATCGCAAAAGGCAGGAGTTGCAGCATTAGGACTAGGCTATGCTGGTGGGGAAGCAGTGTC CACCATGGTGATAGCATTCAGGGAGCGGAGAGATTTCTTGATTAAAAGCTTTGGAGAAATGGAAGGTGTTGGGTTGTCGGAACCTCTGGGAGCATTTTAT CTTTTCATTGATTTCAGCTCGTACTATGGAGCAGAGGTTGAAGGGTTTGGTAAAATTGACGACTCTGACGCCCTTTGCCGTTACCTGCTTGATCAGGCCC AGGTTGCATTAGTTCCAGGGGTTGCATTTGGAGATGACAGCTGCATACGTATATCCTATGCAGCTTCTCTGACCACCCTACAGGCAGCTGTAGAGAGAAT TAAGAAAGCGCTTCTCCCACTCAAGTCTGCCGTCCCTGTGTAA
AA sequence Show only first row Show all	>Potri.005G079200.1 pacid=42802603 polypeptide=Potri.005G079200.1.p locus=Potri.005G079200 ID=Potri.005G079200.1.v4.1 annot-version=v4.1 MAASTSSISRLGFRHHQPLGTNPGSHSQPSGSVSFLSGSHCFYFKPLEATRQSQLSRVSVVVKAESRSEEMQVDISLSPRVTAVKPSKTVAITDQATALA QAGVPVIRLAAGEPDFDTPAVIAEAGINAIREGHTRYTPNAGTQELRVAICQKLKEENGISYKPDQILVSNGAKQSIYQAILAVCSPGDEVIIPAPFWVS YPEMARLADATPVIIPTSISENFLLDPKQLESKLNEKSRLLILCSPSNPTGSVYPKKLLEEIAKIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMW ERTLTVNGFSKAFAMTGWRLGYLAGPKHFVAACNKIQSQFTSGASSISQKAGVAALGLGYAGGEAVSTMVIAFRERRDFLIKSFGEMEGVGLSEPLGAFY LFIDFSSYYGAEVEGFGKIDDSDALCRYLLDQAQVALVPGVAFGDDSCIRISYAASLTTLQAAVERIKKALLPLKSAVPV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G22250		ATAAT, AAT, MEE...	MATERNAL EFFECT EMBRYO ARREST ...		Potri.005G079200 [exp]	0	1
AT1G12500			Nucleotide-sugar transporter f...		Potri.001G114100 [exp]	1.73	0.9415
AT5G18580		FASS2, TON2, GD...	GORDO, FASS 1, EMBRYO DEFECTIV...		Potri.010G022300 [exp]	2.00	0.9435
AT4G15960			alpha/beta-Hydrolases superfam...		Potri.010G010800 [exp]	4.12	0.9199
AT3G16630		ATKINESIN-13A, ...	P-loop containing nucleoside t...		Potri.010G013500 [exp]	4.24	0.9421
AT3G50770		CML41	calmodulin-like 41 (.1)		Potri.007G031900 [exp]	4.47	0.9151
AT5G42330			unknown protein		Potri.002G010400 [exp]	4.69	0.9237
					Potri.011G057400 [exp]	6.32	0.9291
AT5G17920		ATCIMS, ATMETS,...	methionine synthesis 1, COBALA...		Potri.004G190900 [exp]	7.00	0.9331
AT1G65930		cICDH	cytosolic NADP+-dependent isoc...		Potri.004G074900 [exp]	12.00	0.9206
AT3G12955			SAUR-like auxin-responsive pro...		Potri.001G458000 [exp]	12.04	0.9362	SAUR4

Compare expression of checked genes

Potri.005G079200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.