Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G39820 467 / 4e-165 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025185 [exp] 521 / 0 AT4G39820 464 / 6e-164 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10016067 [exp] 519 / 0 AT4G39820 463 / 3e-163 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.005G079300.5 pacid=42803902 polypeptide=Potri.005G079300.5.p locus=Potri.005G079300 ID=Potri.005G079300.5.v4.1 annot-version=v4.1 ATGGACTCCGACTCACCACAACCCGAACCCACACCAGTCCCACCCTCCACCGATCCATTAACCAACCAATTCACCTCCCTCAACGACCTAGCCCACGAAC TGACCTCTCTCCAAGACCTAGCCAACCGCGGCTCCTGGCTATCAATACTCGACAAAGTCAATCGAGCTCGATCTCTCTCTCTCTTAAATACCCCACACGA TCACCTCACTTACCTCGCTTACATCGTTCTCTCTTTCACTAAACTACGCCGTTTCCAAGAAGCCCAGACAGAACTCGATTCCCTCGACGATTTTAACAGT CACCATTACCGCTACGAAACTTACCCTAAAATTTACCCTAACCGGTCCGGTTCGATGGTCCCTTTCTCTCTCCGGTGGCTGCATGCGCTGCTCCCTATTA AATTAGGCAATCGTCAAGAAGGTTTAGATCGGTTTTATTTGTTACTTGATTTTGTACGTGAAAAACTGAATCGCAACGGAAACGATGAGTCAGTCAAAGT TTGGAGGAAGAGAGAGGTTTTTGTTGTTAATCATATAATTAATCAGCATTTGAGTAATAAGGAGTTAAGTGTTTGTTTGGATTTGATTAATGCTTTAATC TCTCGCGGGAATTTAGATCCTGCTTTGTTGTCGAAATTAGGGTATGTGCAGATGCAAATTGGGGATTTGGATGGGGCAAATGTGTCATTTGGTAAGGTAG AGAAAATGTCTAGTGAGAGTGAAGAGAATGAGTCTGGGTTAAGGAATTTGGTTAGTAGGAATAAGGCATTGGTGTATTTGGTGGGGAAGGATTATTTGTC GGCGGTGAGGGAATATGATGAGTGTATTGAGAGGGATGGAATGGATGTTGTGGCGATTAATAATAAGGCGATCTGTTTGATGTATTTGAGGGATTTGTCG GATTCGATTAAGGTTTTGGAGAATTCTCTGGAAAGAGTGCCCACCGTAGCATTGAATGAGACGCTTGTTGTTAATCTGTGTAGCATGTATGAGTTGGCTT ATGTTAATCATTCGGATACTAAGCGGACACTTAGTAATTGGATTGCTCGAGTTGCTCCAGATGATTTTGATTCTTCTTGTACCCGGGTTTGA
AA sequence Show only first row Show all	>Potri.005G079300.5 pacid=42803902 polypeptide=Potri.005G079300.5.p locus=Potri.005G079300 ID=Potri.005G079300.5.v4.1 annot-version=v4.1 MDSDSPQPEPTPVPPSTDPLTNQFTSLNDLAHELTSLQDLANRGSWLSILDKVNRARSLSLLNTPHDHLTYLAYIVLSFTKLRRFQEAQTELDSLDDFNS HHYRYETYPKIYPNRSGSMVPFSLRWLHALLPIKLGNRQEGLDRFYLLLDFVREKLNRNGNDESVKVWRKREVFVVNHIINQHLSNKELSVCLDLINALI SRGNLDPALLSKLGYVQMQIGDLDGANVSFGKVEKMSSESEENESGLRNLVSRNKALVYLVGKDYLSAVREYDECIERDGMDVVAINNKAICLMYLRDLS DSIKVLENSLERVPTVALNETLVVNLCSMYELAYVNHSDTKRTLSNWIARVAPDDFDSSCTRV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G39820			Tetratricopeptide repeat (TPR)...		Potri.005G079300 [exp]	0	1
AT5G28850			Calcium-binding EF-hand family...		Potri.019G019500 [exp]	1.00	0.8135
AT2G42520			P-loop containing nucleoside t...		Potri.001G007900 [exp]	14.49	0.6498
AT4G08850			Leucine-rich repeat receptor-l...		Potri.019G099200 [exp]	17.23	0.7027
AT2G46900			unknown protein		Potri.014G109500 [exp]	18.89	0.6886
AT1G59600		ZCW7	ZCW7 (.1)		Potri.002G118300 [exp]	53.88	0.6536
AT1G32730			unknown protein		Potri.003G085901 [exp]	54.00	0.6703
AT5G06410			DNAJ heat shock N-terminal dom...		Potri.006G200900 [exp]	74.75	0.6542
AT3G24170		ATGR1	glutathione-disulfide reductas...		Potri.001G050000 [exp]	97.71	0.5632	Pt-GR.2,PtrcGR2
					Potri.011G003350 [exp]	103.82	0.6274
AT4G13730			Ypt/Rab-GAP domain of gyp1p su...		Potri.001G316700 [exp]	112.98	0.6203

Compare expression of checked genes

Potri.005G079300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.