Plant FIBer expression Database

Potri.005G079500 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G06920 62 / 2e-10 FLA21 FASCICLIN-like arabinogalactan protein 21 precursor (.1)
AT5G40940 45 / 0.0001 FLA20 putative fasciclin-like arabinogalactan protein 20 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.008G128200
[exp]
68 / 2e-12 AT5G40940 174 / 7e-51 putative fasciclin-like arabinogalactan protein 20 (.1)
Potri.017G111600
[exp]
55 / 6e-08 AT5G40940 216 / 2e-66 putative fasciclin-like arabinogalactan protein 20 (.1)
Potri.001G440800
[exp]
54 / 1e-07 AT1G30800 103 / 3e-25 Fasciclin-like arabinogalactan family protein (.1)
Potri.013G152200
[exp]
43 / 0.0003 AT5G06920 296 / 1e-98 FASCICLIN-like arabinogalactan protein 21 precursor (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10016437
[exp]
450 / 2e-156 AT5G06920 68 / 3e-12 FASCICLIN-like arabinogalactan protein 21 precursor (.1)
Lus10019675
[exp]
447 / 3e-155 AT5G06920 71 / 4e-13 FASCICLIN-like arabinogalactan protein 21 precursor (.1)
Lus10039717
[exp]
61 / 8e-10 AT5G06920 192 / 5e-58 FASCICLIN-like arabinogalactan protein 21 precursor (.1)
Lus10018505
[exp]
61 / 1e-09 AT5G06920 200 / 6e-61 FASCICLIN-like arabinogalactan protein 21 precursor (.1)
Lus10020296
[exp]
57 / 2e-08 AT5G06920 192 / 2e-57 FASCICLIN-like arabinogalactan protein 21 precursor (.1)
Lus10038414
[exp]
41 / 0.001 AT1G30800 117 / 5e-32 Fasciclin-like arabinogalactan family protein (.1)
PFAM info
Representative CDS sequence
>Potri.005G079500.1 pacid=42802375 polypeptide=Potri.005G079500.1.p locus=Potri.005G079500 ID=Potri.005G079500.1.v4.1 annot-version=v4.1
ATGGAGTCTTCTCCGAAACTCTCTATTCTCTTAATTCTCTCGCTCTACATAATCATCTCCTCCACTTCCATTGACGGCGTAGAAACCACCACTTTCAGCT
CAAATCTCTCTCCGCAATCACCACAACCACAAATCTCCACCTCCGATCACTTCCACGACCATTCGTTCTCCTCACACACAAATCTCCTCGCGCCAATCCT
CTCTCACCTAGGATTCACTCAACTCGCCATGGCGGTTCCATCTCTCCCCGCTGATTCCACCACCACGGCCTGGTCAGGTCCTTCCACTCTTTTCGCTCCT
TCCGATTCCTCTCTCCGTACCTGCTTCTCTTGCTCTATCCCTGACCTCCTCCACGAACACATCGTACCCGGTCTCTTCTCCATCGATTACCTCCGTAAAC
TCGCTTTCGGTACCAAAATCGAAACGCTAAGTCCTGGCCGTTGTATAACCGTCACTTCCACTTCACTAAAAAACGACTCCGCCACTCCTTCCACCGTCAA
GGTCTTCATAGGAGGCGTAGAGATCACGCATCCTGATCTCTTCAACAACGGTGTCTTAATCATTCATGGCATCCAAGGCTATATTGCACCACTCTCTCCA
TTCTCTTGCGATTTTGAGAGATTGAGCTCTCTTTCTTTTCCGTTTCAAGAGGGCGTGACTCCTCACGTGACCTCAACTACTCATCAACAGGGTATCGGTA
CTCTGGTGCAGCCTGCTATAATGCGTCTGATGTTACGTGATGCAATGCTTAGGTTGCGTAGTAATGGATTCACGATTCTCTCTCTTGCAATGAGAGTGAA
GTACCCTGAGCTAACGAATCTGGTTAATATGACTGTGTTTGCTCTTGATGATGTGTCGATCTTCTCTGGATCGCATGGGTATATTAGCAGCGTGAGGTTC
CATATTGTGCCTAATCATTACTTGAGCACTGCTGATTTAGAGAGGCTTCCTGTGGGAGCTACTTTGCCTACGCTAGAGAGAGGTCAGGCTTTGGTGGTTA
CTTCTGCTGGTGGATTGACTGGATTCAATACCGCGGTGCCGATGAGGATCAACTATGTGAGAGTTAAGGTGCCTGATGTGATGAGGAACTTGAAGATAGT
TGTTCATGCTGTTTACTTGCCTTTCCCAAGGATTCATCCCACTTCTGCTGCTGCTTTTGATGAGATGATGGGCATTGGTGGTGAAGGACAGAATATAGTG
GCAGCGGAAGATGGTGCTTGTTCTGCGGTTTTTGAGGAGGACGGTAGCTGTGGGACGGTGCCTCCTATGCCAGCTCAGGTCAAGCCATCTGTGGTGGTGC
GGAGTGATGAAGATCACCATGGCCTGTAG
AA sequence
>Potri.005G079500.1 pacid=42802375 polypeptide=Potri.005G079500.1.p locus=Potri.005G079500 ID=Potri.005G079500.1.v4.1 annot-version=v4.1
MESSPKLSILLILSLYIIISSTSIDGVETTTFSSNLSPQSPQPQISTSDHFHDHSFSSHTNLLAPILSHLGFTQLAMAVPSLPADSTTTAWSGPSTLFAP
SDSSLRTCFSCSIPDLLHEHIVPGLFSIDYLRKLAFGTKIETLSPGRCITVTSTSLKNDSATPSTVKVFIGGVEITHPDLFNNGVLIIHGIQGYIAPLSP
FSCDFERLSSLSFPFQEGVTPHVTSTTHQQGIGTLVQPAIMRLMLRDAMLRLRSNGFTILSLAMRVKYPELTNLVNMTVFALDDVSIFSGSHGYISSVRF
HIVPNHYLSTADLERLPVGATLPTLERGQALVVTSAGGLTGFNTAVPMRINYVRVKVPDVMRNLKIVVHAVYLPFPRIHPTSAAAFDEMMGIGGEGQNIV
AAEDGACSAVFEEDGSCGTVPPMPAQVKPSVVVRSDEDHHGL

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

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Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G06920 FLA21 FASCICLIN-like arabinogalactan... Potri.005G079500
[exp]
0 1
AT1G79680 ATWAKL10 WALL ASSOCIATED KINASE (WAK)-L... Potri.003G186200
[exp]
226.65 0.8695

Potri.005G079500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.