Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G39710 243 / 1e-81 PnsL4, FKBP16-2 Photosynthetic NDH subcomplex L 4, FK506-binding protein 16-2 (.1.2) AT5G45680 147 / 3e-44 ATFKBP13 FK506 BINDING PROTEIN 13, FK506-binding protein 13 (.1) AT2G43560 84 / 9e-20 FKBP-like peptidyl-prolyl cis-trans isomerase family protein (.1) AT5G48580 81 / 6e-19 FKBP15-2 FK506- and rapamycin-binding protein 15 kD-2 (.1) AT3G25220 76 / 4e-17 FKBP15-1 FK506-binding protein 15 kD-1 (.1) AT5G05420 67 / 6e-14 FKBP-like peptidyl-prolyl cis-trans isomerase family protein (.1) AT3G10060 67 / 3e-13 FKBP-like peptidyl-prolyl cis-trans isomerase family protein (.1) AT4G25340 66 / 2e-12 ATFKBP53 FK506 BINDING PROTEIN 53 (.1.2) AT3G25230 66 / 3e-12 ROF1, ATFKBP62 FK506 BINDING PROTEIN 62, rotamase FKBP 1 (.1.2) AT5G48570 64 / 8e-12 ROF2, ATFKBP65 FKBP-type peptidyl-prolyl cis-trans isomerase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G087401 [exp] 183 / 3e-59 AT4G39710 158 / 1e-49 Photosynthetic NDH subcomplex L 4, FK506-binding protein 16-2 (.1.2) Potri.001G075500 [exp] 162 / 4e-50 AT5G45680 253 / 7e-86 FK506 BINDING PROTEIN 13, FK506-binding protein 13 (.1) Potri.002G248200 [exp] 79 / 2e-18 AT5G48580 228 / 1e-77 FK506- and rapamycin-binding protein 15 kD-2 (.1) Potri.017G017500 [exp] 75 / 5e-16 AT2G43560 281 / 3e-96 FKBP-like peptidyl-prolyl cis-trans isomerase family protein (.1) Potri.007G134600 [exp] 71 / 9e-15 AT2G43560 286 / 2e-98 FKBP-like peptidyl-prolyl cis-trans isomerase family protein (.1) Potri.014G149400 [exp] 72 / 3e-14 AT5G48570 741 / 0.0 FKBP-type peptidyl-prolyl cis-trans isomerase family protein (.1) Potri.012G129200 [exp] 71 / 4e-14 AT4G25340 344 / 1e-113 FK506 BINDING PROTEIN 53 (.1.2) Potri.002G248300 [exp] 66 / 3e-12 AT3G25230 857 / 0.0 FK506 BINDING PROTEIN 62, rotamase FKBP 1 (.1.2) Potri.015G130900 [exp] 64 / 6e-12 AT4G25340 204 / 1e-59 FK506 BINDING PROTEIN 53 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022507 [exp] 266 / 9e-91 AT4G39710 270 / 8e-93 Photosynthetic NDH subcomplex L 4, FK506-binding protein 16-2 (.1.2) Lus10016811 [exp] 264 / 6e-90 AT4G39710 271 / 5e-93 Photosynthetic NDH subcomplex L 4, FK506-binding protein 16-2 (.1.2) Lus10006949 [exp] 155 / 4e-47 AT5G45680 244 / 2e-82 FK506 BINDING PROTEIN 13, FK506-binding protein 13 (.1) Lus10024735 [exp] 129 / 2e-37 AT5G45680 194 / 1e-63 FK506 BINDING PROTEIN 13, FK506-binding protein 13 (.1) Lus10000197 [exp] 95 / 2e-25 AT4G39710 90 / 2e-24 Photosynthetic NDH subcomplex L 4, FK506-binding protein 16-2 (.1.2) Lus10025889 [exp] 81 / 2e-19 AT5G48580 196 / 1e-65 FK506- and rapamycin-binding protein 15 kD-2 (.1) Lus10038215 [exp] 81 / 2e-17 AT3G25210 368 / 4e-125 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10002339 [exp] 76 / 4e-17 AT3G25220 227 / 1e-77 FK506-binding protein 15 kD-1 (.1) Lus10003170 [exp] 76 / 5e-17 AT3G25220 226 / 4e-77 FK506-binding protein 15 kD-1 (.1) Lus10008359 [exp] 76 / 1e-16 AT2G43560 273 / 1e-93 FKBP-like peptidyl-prolyl cis-trans isomerase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0487 [poplar] [flax] FKBP PF00254 [poplar] [flax] FKBP_C FKBP-type peptidyl-prolyl cis-trans isomerase
Representative CDS sequence Show only first row Show all	>Potri.005G079700.1 pacid=42802610 polypeptide=Potri.005G079700.1.p locus=Potri.005G079700 ID=Potri.005G079700.1.v4.1 annot-version=v4.1 ATGGCAGCACTCTCTGCTATAACATTCACAACCTCAAAAAACCTCTTCAATTCTAACAAACCCACTCTCACTTCCAAACCCACTTCACCATTTTCTTGTC TTTCTTGTTTGTCACATGACAGAGAAACAAATCTCTCATTGAAGTCAGTTTCTAAGACAAAGAAGTGCATTCTTGACGTGGGTTTGGGGCTTTTAGCTGC TTCTGTTCTTGCTTTCTCACCATTGGATGCTGAAGCCACTAGAATTGAGTACTATGCTACGGTAGCAGACCCACCATGTGACCTTAACTTTGTTCCCTCT GGCCTTGGTTACTGTGATATTTCTGTAGGGCCTGGTGTGGATGCCCCGTATAATGAGCTCATTAATGTCCATTACACTGCAAGATTCGCTGATGGGAGAG TCTTTGACAGCAGCTATAAACGCGGCAGACCTCTCACTATGCGCATTGGCGTTGGTAAGGTCATTAGAGGATTGGATCAGGGAATTCTAGGGGGTGAAGG GGTGCCCCCAATGCAAGAAGGTGGAAGACGTAAGCTATATATTCCTCCTCCTTTAGCATATGGTCCAGAACCTGCAGGGTGCTTCTCAGGTGATTGCAAT ATCCCTGGCAATGCAACTCTTCTCTATGATATTAATTTTGTTGGAGTTTACTCTGGGAATAGGAGTTTACCAAAAAAATGA
AA sequence Show only first row Show all	>Potri.005G079700.1 pacid=42802610 polypeptide=Potri.005G079700.1.p locus=Potri.005G079700 ID=Potri.005G079700.1.v4.1 annot-version=v4.1 MAALSAITFTTSKNLFNSNKPTLTSKPTSPFSCLSCLSHDRETNLSLKSVSKTKKCILDVGLGLLAASVLAFSPLDAEATRIEYYATVADPPCDLNFVPS GLGYCDISVGPGVDAPYNELINVHYTARFADGRVFDSSYKRGRPLTMRIGVGKVIRGLDQGILGGEGVPPMQEGGRRKLYIPPPLAYGPEPAGCFSGDCN IPGNATLLYDINFVGVYSGNRSLPKK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G39710		PnsL4, FKBP16-2	Photosynthetic NDH subcomplex...		Potri.005G079700 [exp]	0	1
AT3G62030		CYP20-3, ROC4	cyclophilin 20-3, rotamase CYP...		Potri.002G185200 [exp]	1.41	0.9787	ROC4.1
AT2G35410			RNA-binding (RRM/RBD/RNP motif...		Potri.001G141300 [exp]	3.00	0.9728
AT1G19150		LHCA2*1, LHCA2*...	photosystem I light harvesting...		Potri.006G139600 [exp]	3.31	0.9797	Lhca6,Pt-LHCA2*1.1
AT3G55330		PPL1	PsbP-like protein 1 (.1)		Potri.010G210200 [exp]	6.00	0.9745
AT5G54600			Translation protein SH3-like f...		Potri.001G415400 [exp]	8.83	0.9750
AT5G21430		NdhU, CRRL	NADH dehydrogenase-like comple...		Potri.006G221900 [exp]	10.00	0.9711
AT1G07320		EMB2784, RPL4	EMBRYO DEFECTIVE 2784, ribosom...		Potri.006G221100 [exp]	10.67	0.9737
AT5G52970			thylakoid lumen 15.0 kDa prote...		Potri.016G092300 [exp]	12.24	0.9689
AT2G43030			Ribosomal protein L3 family pr...		Potri.013G070100 [exp]	12.40	0.9734
AT5G65220			Ribosomal L29 family protein ...		Potri.007G093700 [exp]	12.64	0.9737

Compare expression of checked genes

Potri.005G079700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.