Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G10080 538 / 0 Eukaryotic aspartyl protease family protein (.1) AT4G35880 302 / 2e-96 Eukaryotic aspartyl protease family protein (.1) AT2G17760 286 / 2e-90 Eukaryotic aspartyl protease family protein (.1) AT3G51330 228 / 3e-68 Eukaryotic aspartyl protease family protein (.1) AT3G51360 216 / 5e-64 Eukaryotic aspartyl protease family protein (.1) AT3G51350 214 / 1e-62 Eukaryotic aspartyl protease family protein (.1) AT3G51340 207 / 5e-60 Eukaryotic aspartyl protease family protein (.1) AT1G05840 116 / 9e-28 Eukaryotic aspartyl protease family protein (.1) AT3G02740 112 / 2e-26 Eukaryotic aspartyl protease family protein (.1) AT3G50050 111 / 1e-25 Eukaryotic aspartyl protease family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G092100 [exp] 560 / 0 AT5G10080 474 / 3e-163 Eukaryotic aspartyl protease family protein (.1) Potri.007G063800 [exp] 315 / 2e-101 AT4G35880 696 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.005G108700 [exp] 263 / 2e-81 AT2G17760 515 / 1e-179 Eukaryotic aspartyl protease family protein (.1) Potri.014G146400 [exp] 115 / 1e-27 AT1G05840 758 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.009G001700 [exp] 104 / 1e-23 AT5G22850 711 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.001G213600 [exp] 104 / 1e-23 AT5G22850 704 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.019G054900 [exp] 100 / 2e-22 AT3G02740 572 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.002G081400 [exp] 96 / 4e-21 AT1G44130 449 / 1e-156 Eukaryotic aspartyl protease family protein (.1) Potri.014G020200 [exp] 96 / 1e-20 AT5G43100 807 / 0.0 Eukaryotic aspartyl protease family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019678 [exp] 627 / 0 AT5G10080 567 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10016434 [exp] 568 / 0 AT5G10080 515 / 1e-180 Eukaryotic aspartyl protease family protein (.1) Lus10028410 [exp] 318 / 2e-101 AT4G35880 672 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10041864 [exp] 312 / 1e-100 AT4G35880 646 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10028411 [exp] 278 / 4e-87 AT2G17760 527 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10041865 [exp] 267 / 8e-83 AT2G17760 523 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10021485 [exp] 112 / 4e-26 AT1G05840 723 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10042982 [exp] 104 / 2e-23 AT1G49050 569 / 0.0 Eukaryotic aspartyl protease family protein (.1.2) Lus10021397 [exp] 100 / 3e-22 AT5G22850 677 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10005356 [exp] 98 / 2e-21 AT5G22850 669 / 0.0 Eukaryotic aspartyl protease family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0129 [poplar] [flax] Peptidase_AA PF00026 [poplar] [flax] Asp Eukaryotic aspartyl protease
Representative CDS sequence Show only first row Show all	>Potri.005G079900.1 pacid=42805571 polypeptide=Potri.005G079900.1.p locus=Potri.005G079900 ID=Potri.005G079900.1.v4.1 annot-version=v4.1 ATGGAGGCTCCATTTCTACTGCTAATTCTAGTAATGTCAAGCTTTCTAGTCCAAAACACTGTAGAATTAGCTACTTTCTCGTCCAGGCTGATACACAGAT TTTCTAAGGAATATAAGGAAGTTAGCGTTTCAAGGGGAGGGGACGTGAATGGCACGTGGTGGCCGGAGAAGAAGAGCAAGGAATATTACCAGATACTAGT CAGCAGTGACTTAAAGAGGCAGAAATTGAAGCTTGGTCCTCATTATCAGCTTCTCTTCCCTTCTCAGGGTAGCAAAACGATGTCGCTTGGCAATGACTTC GGCTGGTTGCATTACACGTGGATTGATATAGGGACGCCACATGTATCGTTTATGGTGGCTTTGGATTCTGGGAGTGATTTGTTTTGGGTACCTTGTGATT GTGTGCAATGTGCTCCTTTATCTGCTAGTCACTACAGTAGTTTGGATAGAGATCTTAGTGAATATAGCCCGTCTCAGTCAAGCACCAGCAAGCAATTGTC TTGCAGTCATCGGTTGTGTGACATGGGTCCAAATTGCAAAAACCCAAAGCAGTCATGCCCTTACAGTATCAATTATTATACAGAAAGTACATCAAGTTCT GGATTGCTGGTTGAGGACATAATACATCTTGCATCTGGTGGTGATGACACATTGAATACTTCTGTGAAGGCTCCAGTGATCATAGGATGTGGCATGAAGC AAAGTGGTGGTTACTTAGATGGTGTTGCTCCTGATGGTCTTTTGGGTTTGGGCCTGCAAGAAATCTCAGTTCCAAGTTTTCTTGCTAAAGCAGGATTAAT TCAGAATTCTTTCTCAATGTGCTTTAACGAGGATGATTCAGGGAGAATATTCTTTGGTGATCAGGGACCAGCTACCCAACAATCTGCTCCATTTCTGAAA TTAAACGGGAACTACACAACCTACATTGTTGGAGTGGAGGTTTGTTGTGTTGGCACTTCTTGTCTTAAGCAAAGTAGCTTCAGTGCACTGGTGGATAGTG GCACATCATTTACATTTCTTCCAGATGATGTTTTTGAAATGATTGCCGAGGAGTTTGACACACAAGTAAATGCTTCGAGATCTAGCTTTGAAGGGTATTC TTGGAAATATTGCTACAAGACTAGTTCACAGGACTTGCCCAAGATTCCATCTTTGAGGCTTATCTTCCCTCAGAACAACAGCTTTATGGTCCAGAATCCT GTTTTTATGATCTATGGCATTCAGGGAGTTATTGGCTTTTGTTTGGCAATTCAACCAGCGGATGGAGATATTGGAACAATTGGACAGAATTTCATGATGG GATATCGGGTGGTCTTTGATAGAGAAAATTTGAAGTTAGGGTGGTCACGTTCTAATTGTGGAGATGAAGGTGATGGTAAGACGTTGCCGCTTACTCCATC TGGGACACCCCAGAATCCACTGCCAACCAATGAGCAGCAGAGCACTCCTGGAGGACATGCAGTTTCACCTGCTGTTGCTGTAAACGCACCCTCCAAACCA TCAGCTGCTTCAAGCCAACTAATTTCAACTCGGTTTTGTTTGTTAAAATGTCTGCTGCCACTGTATCTTCTGCATCGGGTTGTTTCAGCTTCATGA
AA sequence Show only first row Show all	>Potri.005G079900.1 pacid=42805571 polypeptide=Potri.005G079900.1.p locus=Potri.005G079900 ID=Potri.005G079900.1.v4.1 annot-version=v4.1 MEAPFLLLILVMSSFLVQNTVELATFSSRLIHRFSKEYKEVSVSRGGDVNGTWWPEKKSKEYYQILVSSDLKRQKLKLGPHYQLLFPSQGSKTMSLGNDF GWLHYTWIDIGTPHVSFMVALDSGSDLFWVPCDCVQCAPLSASHYSSLDRDLSEYSPSQSSTSKQLSCSHRLCDMGPNCKNPKQSCPYSINYYTESTSSS GLLVEDIIHLASGGDDTLNTSVKAPVIIGCGMKQSGGYLDGVAPDGLLGLGLQEISVPSFLAKAGLIQNSFSMCFNEDDSGRIFFGDQGPATQQSAPFLK LNGNYTTYIVGVEVCCVGTSCLKQSSFSALVDSGTSFTFLPDDVFEMIAEEFDTQVNASRSSFEGYSWKYCYKTSSQDLPKIPSLRLIFPQNNSFMVQNP VFMIYGIQGVIGFCLAIQPADGDIGTIGQNFMMGYRVVFDRENLKLGWSRSNCGDEGDGKTLPLTPSGTPQNPLPTNEQQSTPGGHAVSPAVAVNAPSKP SAASSQLISTRFCLLKCLLPLYLLHRVVSAS

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G10080			Eukaryotic aspartyl protease f...		Potri.005G079900 [exp]	0	1
AT2G38840			Guanylate-binding family prote...		Potri.005G217300 [exp]	3.00	0.8854
AT2G43200			S-adenosyl-L-methionine-depend...		Potri.007G123500 [exp]	5.09	0.8770
AT2G34710	HD	ATHB14, PHB-1D,...	PHABULOSA 1D, PHABULOSA, ARABI...		Potri.001G372300 [exp]	7.74	0.8648	PHB.2
AT3G49250		IDN1, DMS3	INVOLVED IN DE NOVO 1, defecti...		Potri.002G172000 [exp]	8.48	0.8593
AT2G15730			P-loop containing nucleoside t...		Potri.009G105200 [exp]	12.12	0.8493
AT1G49730			Protein kinase superfamily pro...		Potri.004G140301 [exp]	12.24	0.8593
AT2G25270			unknown protein		Potri.006G258700 [exp]	12.64	0.8599
AT3G59110			Protein kinase superfamily pro...		Potri.005G203300 [exp]	16.73	0.8362
AT2G16250			Leucine-rich repeat protein ki...		Potri.014G196600 [exp]	17.20	0.8119
AT3G12020			P-loop containing nucleoside t...		Potri.016G060400 [exp]	17.32	0.8237

Compare expression of checked genes

Potri.005G079900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.