Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G47570 818 / 0 Leucine-rich repeat protein kinase family protein (.1) AT5G20480 773 / 0 EFR EF-TU receptor (.1) AT3G47090 767 / 0 Leucine-rich repeat protein kinase family protein (.1) AT3G47580 749 / 0 Leucine-rich repeat protein kinase family protein (.1) AT3G47110 738 / 0 Leucine-rich repeat protein kinase family protein (.1) AT2G24130 482 / 5e-154 Leucine-rich receptor-like protein kinase family protein (.1) AT5G46330 446 / 2e-138 FLS2 FLAGELLIN-SENSITIVE 2, Leucine-rich receptor-like protein kinase family protein (.1) AT5G56040 437 / 7e-136 Leucine-rich receptor-like protein kinase family protein (.1.2) AT5G63930 435 / 4e-135 Leucine-rich repeat protein kinase family protein (.1) AT1G17230 426 / 1e-131 Leucine-rich receptor-like protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G034000 [exp] 1258 / 0 AT3G47570 827 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.017G115900 [exp] 1226 / 0 AT3G47570 810 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.017G145200 [exp] 1214 / 0 AT3G47570 793 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.010G228200 [exp] 1202 / 0 AT3G47570 798 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.013G133100 [exp] 1196 / 0 AT3G47570 761 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.008G033700 [exp] 1195 / 0 AT3G47570 799 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.017G151400 [exp] 1184 / 0 AT3G47570 763 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.010G228300 [exp] 1174 / 0 AT3G47570 743 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.017G152500 [exp] 1165 / 0 AT3G47570 753 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030845 [exp] 905 / 0 AT3G47570 796 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030638 [exp] 886 / 0 AT3G47570 771 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030903 [exp] 880 / 0 AT3G47570 798 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10032306 [exp] 879 / 0 AT3G47570 792 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030587 [exp] 877 / 0 AT3G47570 776 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10004388 [exp] 875 / 0 AT3G47570 815 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030855 [exp] 875 / 0 AT3G47570 790 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10011386 [exp] 866 / 0 AT3G47570 787 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10037840 [exp] 859 / 0 AT3G47570 815 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030854 [exp] 858 / 0 AT3G47110 758 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0016 [poplar] [flax] PF08263 [poplar] [flax] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.005G080000.1 pacid=42803311 polypeptide=Potri.005G080000.1.p locus=Potri.005G080000 ID=Potri.005G080000.1.v4.1 annot-version=v4.1 ATGGAGTTATCAGGCATGAGTTCATGCATATTCTGCCCACTTCTCTTGCTAATAATTCAACTCTCATTTTCCTTTTCATTACATGAAGGAAATGAGACAG ATAGACTTTCTTTGCTAGCTTTTAAGGCTCAAATTACGGATCCCCTTGATGCACTGAGCTCATGGAATGCATCCACACACTTCTGCAAGTGGTCAGGTGT CATATGTGGACATCGACATCAGAGAATCGTCGAGCTCAACCTGCAGTCTTCCCAACTGACGGGCAACCTGTCTCCCCATATTGGCAACTTGAGTTTTCTC AGGGTACTAAACCTGGAAGGCAACTACTTCAGTCGTGATATTCCTCAAGAACTAGGCCGGTTGTTTCGATTACAGAGGTTGGTGCTCGGAAACAACACAT TCAGCGGTGAAATTCCTGTCAACATTTCAAGTTGCTCGAATCTTCTTGTCCTTCATCTAGGGAGCAATAATCTTACAGGTAAAATTCCTGCACAGCTGGG ATCATTATCAAAGTTGGGGGCATTTGTTCTCCAAGGTAACAATCTAGTTGGTGATATACCATCTTCTTTTGGAAACCTGTCCTCCGTTCAGAACTTCTTC TGGACGAAAAACTATTTGCGAGGAGGTATTCCAGAGAGTCTTGGAAATTTGAAAAGATTAAAATACTTTGCAGTTGCTGAAAATGATCTCAGTGGTACGA TCCCTTCCTCCATATGCAATATCTCTTCTCTTGCCTATGTCTCTCTAGGACAGAACCAACTTCATGGGAGTCTTCCTCCTGATTTAGGCCTAAATCTTCC AAATCTCGCATACCTTGTCATCAACTTCAACCATTTGAACGGACCAATTCCAGCAACGCTCTCCAATGCCTCGAAAATTTTTCTTGTTGATCTTTCATAT AACAACTTAACTGGGAAAATACCCGATTTAGCAAGCTTGCCTGATCTACAGAAGCTGTTAGTTCACCACAATGATCTCGGAAACGGTGAGGAAGATGACT TGAGTTTTCTCTATACCTTGGCAAACAGCACCAATTTGGAATCATTGGGAATAAATGATAACAATTTCGGAGGAGTGCTGCCCGAAATAGTGAGTAACTT CTCAACAAATCTCAAGGGAATAACATTTGGAAGGAATCAAATACATGGAAGCATTCCAACTGAGATTGGAAACCTCATTAGCCTGGATACTTTGAGTTTG GAGACAAATCAATTGCATGGCATTATACCAAGTTCTATTGGTAAATTACAAAATTTAGCTGCTCTCTATCTTAATGAAAACAAAATCTCAGGAAGTATTC CATCTTCTTTGGGAAATATTACCTCGTTGGTCGAAGTTAGTTTCGCACAAAACAATTTACAAGGAACTATCCCGGCAAGTCTTGGAAATTGGCACAAGTT GTTGATCTTGGATCTCTCTCAAAACAATCTGAGCGGTCCCATACCAAAAGAAGTACTTGGTATTTCATCCTTGTCAGTGTTGTTATACCTACATGATAAT CAGTTGACAGGCTCCCTTCCATCGGAAGTGGGTCAGTTGGTGAATCTTGGATTTCTGAGGGTTTCCAAAAACAGGTTGTCGGGTGAAATTCCAAAAAGTC TTGACAGTTGTAAGAGTTTAGAAGGTTTGGATTTGGGGGGTAACTTTTTTGAAGGGCCTGTTCCTGATTTGAGCTCTTTGCGAGCACTTCAAATGCTTCT TCTCTCGTACAACAACTTGAGTGGCCAGATTCCCCAGTTCTTGAAAGACTTCAAGTTGCTGGAGACTTTGGATTTGTCATATAATGACTTTGAAGGTGAG GTGCCTGAACAAGGAGTCTTTGAGAATACAAGTAGGATTTCCGTTCAGGGAAACAAGAAGCTCTGTGGAGGAATACCTCAGCTTGATCTGCCCAAATGCA CATCTAACGAACCAGCAAGGCCAAAATCTCATACCAAGCTGATATTGATCATTGCAATTCCTTGTGGCTTTCTTGGTATAGTCTTGATGACCTCTTTCCT GCTTTTCTACTCGAGAAAAACAAAAGACGAGCCTGCTTCTGGCCCTTCATGGGAGAGCTCATTTCAGAGACTAACCTACCAAGACCTCCTGCAAGCAACT GACGGGTTCTCCTCGTCCAATTTAGTTGGTGCAGGTGCTTTTGGGTCAGTGTACAGAGGAACTCTCACATCAGATGGAGCAGTTGTTGCAGTGAAAGTAT TGAACCTTCTACGTAAAGGAGCTTCCAAAAGTTTTATGGCAGAATGTGCAGCCTTGATAAACATCAGGCACCGAAATCTTGTCAAGGTAATAACTGCTTG TTCCAGTAATGATTTTCAAGGAAATGACTTCAAAGCTCTAGTTTATGAGTTCATGGTCAATGGGAGTCTAGAAGAATGGCTGCATCCAGTCCATATATCT GATGTCACACCCGAGACAAGAAATTTGGATCTCGTTCAGAGATTGAACATTGCAATTGATGTGGCTAGTGCGCTTGACTATCTGCACAACCACTGCCAAG TTCCTGTTGTTCACTGCGATCTGAAGCCCAGCAATGTTCTCCTTGGTGATGACATGACTGCTTGTGTTGGAGACTTTGGATTAGCAAGGTTCCTTCCAGA AGCGTCCAATCAATTACCTGCAGATGAGAGCAGTTCTGTCGGCTTAAAAGGCACCATCGGTTACGCAGCCCCAGAGTACGGTATGGGAAGTGAAGTGTCA ACTTACGGAGATGTGTACAGCTATGGCATCCTGCTGCTGGAGATGTTTACAGGAAGAAGACCGACAGATGGCATGTTTAAAGACGGGCACAACCTTCACA ATTACGCTAAAATGGTGCTGCCTGACAACGTGTTGGAGTTTGTGGATCCAACACTGAGAGAACACGAGGAAATGAACCATAATGATGATAGTCACAAAGT TATGGAATGTATGGTTTCAATTATCAAGGCAGGACTTGCTTGTTCTGCAGAATTGCCAGGAGAGAGGATGGGCATTGCCAACGTTGTGGTTGAATTGCAT CGAATCAGGGAAATGCTTCTTGGAATCAAGACGAGAGAGAGAGGTGAAATCATTCCCTCATCCATAGATTCCTGA
AA sequence Show only first row Show all	>Potri.005G080000.1 pacid=42803311 polypeptide=Potri.005G080000.1.p locus=Potri.005G080000 ID=Potri.005G080000.1.v4.1 annot-version=v4.1 MELSGMSSCIFCPLLLLIIQLSFSFSLHEGNETDRLSLLAFKAQITDPLDALSSWNASTHFCKWSGVICGHRHQRIVELNLQSSQLTGNLSPHIGNLSFL RVLNLEGNYFSRDIPQELGRLFRLQRLVLGNNTFSGEIPVNISSCSNLLVLHLGSNNLTGKIPAQLGSLSKLGAFVLQGNNLVGDIPSSFGNLSSVQNFF WTKNYLRGGIPESLGNLKRLKYFAVAENDLSGTIPSSICNISSLAYVSLGQNQLHGSLPPDLGLNLPNLAYLVINFNHLNGPIPATLSNASKIFLVDLSY NNLTGKIPDLASLPDLQKLLVHHNDLGNGEEDDLSFLYTLANSTNLESLGINDNNFGGVLPEIVSNFSTNLKGITFGRNQIHGSIPTEIGNLISLDTLSL ETNQLHGIIPSSIGKLQNLAALYLNENKISGSIPSSLGNITSLVEVSFAQNNLQGTIPASLGNWHKLLILDLSQNNLSGPIPKEVLGISSLSVLLYLHDN QLTGSLPSEVGQLVNLGFLRVSKNRLSGEIPKSLDSCKSLEGLDLGGNFFEGPVPDLSSLRALQMLLLSYNNLSGQIPQFLKDFKLLETLDLSYNDFEGE VPEQGVFENTSRISVQGNKKLCGGIPQLDLPKCTSNEPARPKSHTKLILIIAIPCGFLGIVLMTSFLLFYSRKTKDEPASGPSWESSFQRLTYQDLLQAT DGFSSSNLVGAGAFGSVYRGTLTSDGAVVAVKVLNLLRKGASKSFMAECAALINIRHRNLVKVITACSSNDFQGNDFKALVYEFMVNGSLEEWLHPVHIS DVTPETRNLDLVQRLNIAIDVASALDYLHNHCQVPVVHCDLKPSNVLLGDDMTACVGDFGLARFLPEASNQLPADESSSVGLKGTIGYAAPEYGMGSEVS TYGDVYSYGILLLEMFTGRRPTDGMFKDGHNLHNYAKMVLPDNVLEFVDPTLREHEEMNHNDDSHKVMECMVSIIKAGLACSAELPGERMGIANVVVELH RIREMLLGIKTRERGEIIPSSIDS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G47570			Leucine-rich repeat protein ki...		Potri.005G080000 [exp]	0	1
AT4G26090		RPS2	RESISTANT TO P. SYRINGAE 2, NB...		Potri.001G435000 [exp]	15.13	0.8270
AT5G05800			unknown protein		Potri.001G243108 [exp]	22.67	0.8176
AT1G34150			Pseudouridine synthase family ...		Potri.002G061650 [exp]	29.66	0.8138
AT5G01310	bHLH	APTX, bHLH140	APRATAXIN-like (.1)		Potri.016G120200 [exp]	39.94	0.8099
AT1G79910			Regulator of Vps4 activity in ...		Potri.001G181300 [exp]	41.07	0.7163
AT3G14470			NB-ARC domain-containing disea...		Potri.012G121801 [exp]	43.17	0.8062
AT3G14470			NB-ARC domain-containing disea...		Potri.017G015300 [exp]	48.16	0.7985
AT1G79910			Regulator of Vps4 activity in ...		Potri.003G054700 [exp]	48.49	0.7811
AT3G12210			DNA binding (.1.2)		Potri.002G114400 [exp]	49.63	0.8017
AT4G02550			unknown protein		Potri.011G163248 [exp]	51.08	0.8051

Compare expression of checked genes

Potri.005G080000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.