Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G22125 3215 / 0 POM2, CSI1 POM-POM 2, cellulose synthase-interactive protein 1, binding (.1) AT1G77460 1717 / 0 Armadillo/beta-catenin-like repeat ; C2 calcium/lipid-binding domain (CaLB) protein (.1), Armadillo/beta-catenin-like repeat ; C2 calcium/lipid-binding domain (CaLB) protein (.2) AT1G44120 1326 / 0 Armadillo/beta-catenin-like repeat ; C2 calcium/lipid-binding domain (CaLB) protein (.1) AT3G46510 70 / 2e-11 ATPUB13 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) AT2G23140 66 / 3e-10 RING/U-box superfamily protein with ARM repeat domain (.1.2) AT2G28830 64 / 1e-09 AtPUB12 PLANT U-BOX 12 (.1) AT3G54790 61 / 1e-08 ARM repeat superfamily protein (.1.2) AT5G58680 60 / 1e-08 ARM repeat superfamily protein (.1) AT5G67340 58 / 8e-08 ARM repeat superfamily protein (.1) AT3G01400 57 / 1e-07 ARM repeat superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G087200 [exp] 3863 / 0 AT2G22125 3229 / 0.0 POM-POM 2, cellulose synthase-interactive protein 1, binding (.1) Potri.005G180100 [exp] 1774 / 0 AT1G77460 2772 / 0.0 Armadillo/beta-catenin-like repeat ; C2 calcium/lipid-binding domain (CaLB) protein (.1), Armadillo/beta-catenin-like repeat ; C2 calcium/lipid-binding domain (CaLB) protein (.2) Potri.009G029600 [exp] 67 / 9e-11 AT3G46510 935 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) Potri.001G238500 [exp] 66 / 3e-10 AT3G46510 912 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) Potri.005G225400 [exp] 66 / 3e-10 AT3G54790 736 / 0.0 ARM repeat superfamily protein (.1.2) Potri.007G051000 [exp] 63 / 2e-09 AT2G23140 1018 / 0.0 RING/U-box superfamily protein with ARM repeat domain (.1.2) Potri.002G037700 [exp] 62 / 4e-09 AT3G54790 707 / 0.0 ARM repeat superfamily protein (.1.2) Potri.002G081101 [exp] 56 / 4e-09 AT1G77460 66 / 3e-14 Armadillo/beta-catenin-like repeat ; C2 calcium/lipid-binding domain (CaLB) protein (.1), Armadillo/beta-catenin-like repeat ; C2 calcium/lipid-binding domain (CaLB) protein (.2) Potri.010G113900 [exp] 62 / 6e-09 AT1G23030 732 / 0.0 ARM repeat superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019679 [exp] 3442 / 0 AT2G22125 3364 / 0.0 POM-POM 2, cellulose synthase-interactive protein 1, binding (.1) Lus10042730 [exp] 1467 / 0 AT1G77460 2385 / 0.0 Armadillo/beta-catenin-like repeat ; C2 calcium/lipid-binding domain (CaLB) protein (.1), Armadillo/beta-catenin-like repeat ; C2 calcium/lipid-binding domain (CaLB) protein (.2) Lus10029691 [exp] 179 / 6e-50 AT1G77460 265 / 6e-81 Armadillo/beta-catenin-like repeat ; C2 calcium/lipid-binding domain (CaLB) protein (.1), Armadillo/beta-catenin-like repeat ; C2 calcium/lipid-binding domain (CaLB) protein (.2) Lus10029690 [exp] 129 / 2e-33 AT1G77460 183 / 1e-53 Armadillo/beta-catenin-like repeat ; C2 calcium/lipid-binding domain (CaLB) protein (.1), Armadillo/beta-catenin-like repeat ; C2 calcium/lipid-binding domain (CaLB) protein (.2) Lus10016565 [exp] 66 / 3e-10 AT3G46510 884 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) Lus10040834 [exp] 66 / 3e-10 AT3G46510 879 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) Lus10011514 [exp] 64 / 2e-09 AT2G23140 916 / 0.0 RING/U-box superfamily protein with ARM repeat domain (.1.2) Lus10019308 [exp] 64 / 2e-09 AT2G23140 911 / 0.0 RING/U-box superfamily protein with ARM repeat domain (.1.2) Lus10012260 [exp] 60 / 2e-08 AT5G42340 695 / 0.0 Plant U-Box 15 (.1) Lus10034113 [exp] 60 / 3e-08 AT3G59770 1913 / 0.0 ARABIDOPSIS THALIANA SUPPRESSOR OF ACTIN 9, sacI homology domain-containing protein / WW domain-containing protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0154 [poplar] [flax] C2 PF00168 [poplar] [flax] C2 C2 domain
Representative CDS sequence Show only first row Show all	>Potri.005G080100.3 pacid=42803202 polypeptide=Potri.005G080100.3.p locus=Potri.005G080100 ID=Potri.005G080100.3.v4.1 annot-version=v4.1 ATGGCGGCTACACTCGCTTGGAGGTTATCTGCTACCAATGGCAGCAGCCTTGCCACTACTGATCTGGAAAAAAATGGCAATCTAAAAACTCAAGATTCAG AGCCTCCAACTCCCCGTTCAGTTATGAAGATGGGTGTGAGAGACCGTACTGGTAGCATGGAGGATCCAGATGGCACACTAGCAAGTGTTGCACAATGCAT TGAGCAGCTGCGCCGGAGCTCCTCATCTGTACAAGAGAAGGAGTATGCATTGAGACAGTTGCGAGAACTTGTTGAGACGCGTGAAAATGCTTTCAGTGCT GTTGGATCTCACTCTCAAGCAGTTCCGGTGCTTGTTTCTCTTCTCCGGTCCGGATCACTGGGGGTTAAGATACAGGCTGCTACTGTCTTAGGTTCTCTCT GCAAGGAGAATGAACTAAGGGTAAAGGTCTTACTTGGAGGATGCATCCCACCGTTGCTAGGTCTGCTCAAGTCTAGCTCCGAAGAAGGTCAAATTGCAGC AGCAAAGACGATATATGCTGTGTCTCAGGGTGGTGCTAAGGATCATGTTGGATCAAAAATTTTTTCAACTGAAGGAGTTGTGCCTGTGCTCTGGGAGTTG CTTCGTAATGGGCTCAAAACAGGTAAATTAGTTGATAACTTGTTGACTGGAGCATTAAAAAACCTCTCCAGCAGCACTGAGGGATTTTGGTCTGCAACAA TACAAGCTGGAGGAGTGGATATTCTGGTTAAGTTGCTCACAACAGGACAGTCAGACACACAAGCTAACATCTGCTTTCTTCTTGCGTGCATGATGATGGA AGATGAATCTATTTGTTCCAAAGTATTAGCTGCAGAGGCTACTAAACAGTTGCTCAAGCTGTTAGGACCTGGCAATGAAGCCTCTGTTAGAGCAGAAGCT GCAGGTGCCCTTAAGTCTCTTTCTGCACAGTGCAAAGATGCAAGGCAAGAGATAGCTAAATCTAATGGTATTCCTGCTCTGATAAACGCTACAATAGCTC CTTCAAAAGAATTCATGCAGGGGGAGTATGCCCAAGCATTACAGGAGCATGCAATGTGTGCCCTGGCAAATATTTCTGGTGGCTTGTCATTTGTTATCTC AAGCCTCGGTCAAAGCCTTGAATCATGCTCTTCTCCTGCCCAGACTGCTGATACTTTAGGAGCTTTGGCTTCGGCTTTGATGATATATGATAGCAAAGCT GAATCCACCAGGGCATCAGATCCTGTTGTTATTGAGCAGACTTTAGTTAATCAGTTCAATCCTCATTTACCATATCTTGTGCAGGAACGTACCATAGAAG CATTAGCTAGTTTGTATGGGAATGCCATACTTTCAGTTAAACTCGCGAATTCTGAAGCAAAACGGTTGCTTGTTGGTTTGATTACAATGGCAACCAATGA AGTTCAGGATGAGCTTGTAAGAGCTCTTCTTGCACTTTGCAATAATGAAGGCAGTCTATGGCGTTCGCTTCAAGGACGTGAAGGAGTTCAGCTATTGATA TCCCTTCTTGGGCTTTCATCAGAACAGCAGCAGGAATGTGCAGTGGCGTTGCTTTGCCTTCTATCTAATGAAAACGATGAAAGCAAGTGGGCCATCACTG CTGCTGGTGGTATACCCCCCCTTGTTCAAATTCTAGAGACAGGATCCGCTAAAGCCAAGGAAGATTCTGCTACTATCCTTAGGAACTTGTGCAATCACAG TGAAGATATACGTGCATGCGTGGAAAGTGCTGATGCTGTTCCTGCATTGCTATGGCTACTGAAGAATGGGAGCCTCAATGGGAAAGAAATTGCAGCAAAG ACTTTAAATCATTTGATACATAAATCTGATACAGCTACTATTAGCCAGCTCACTGCATTGTTAACCAGTGATCTACCTGAATCAAAAGTGTATGTCCTGG ATGCTCTAAGAAGCATGCTTTCTGTAGTTCACTTGAGTGATGTGCTACGGGAGGGCAGTGCTGCAAATGATGCGATTGAGACAATGATTAAGATATTGAG CTCTACTAAAGAAGAGACCCAGGCCAAGTCTGCCTCTGCTTTGGCTGGAATTTTTGAAACTAGAAAGGATTTACGTGAAAGCAGCATCTCTGTTAAAACA CTTTGGTCAGTGATGAAGTTGCTAAATGTTGAATCTGAAAACATCTTAGCAGAGTCATCTCATTGTCTTGCTTCGATATTTCTTTCAATTAAAGAGAACC GGGATGTGGCTGCTGTTGCTCGTGATGCGTTATCCCCTTTAATTGCACTAGCTAACTCATCGACCTTGGAAGTTGCTGAACAGGCGACATGTGCTCTTGC AAATCTTATTTTGGATGGTGAAGTTTCAAAAAAAGCAATTCCAAATGAAATTATTGTGCCTGCAACAAGGGTTTTGCGTGAAGGCACAATTTCTGGAAAG ACCCATGCAGCAGCAGCGATCGCTCGTCTCCTTCATTCTCGTAGAATTGATAATTCCATAACTGATTGTGTCAATCATGCTGGAACAGTACTCGCATTAG TTTCTTTTCTAGAATCTGCTATTGGCAGATCTGCTGCCACATCAGAGGCTCTGGCTGCACTTGCTATTTTGTCAAGGTCAGAAGGGGCTAGCGGACACAT CAAACCAGCATGGGCAGTTTTAGCTGAATTTCCAAACCACATATCCCCAATAGTTTCGTCGATTGCAGATGCAACACCCTTGTTGCAGGACAAGGCTATC GAAATATTGTCACGACTTTGCCGAGATCAGCCTTTTGTTTTAGGAAATGCGGTTGCTAGTGCCTCTGGATGTATACCATCTGTGGCTAGAAGGGCGATTG ATTCCACAAGCCCAAAGGTCAAAATTGGGGGAGCTGCACTTCTTATTTGTGCTGCAAAAGTTAGTCACCAGAGGGTGGTGGAAGATCTTAACCAATCAAA TTCATGTAATCACCTTATTCAATCACTTGTCACAATGCTTTGTTCTGCAGACACTTCTCCTTCAGGAAACCTGGTTGATGATGACAGGGAGGTCATTAGC ATATACAGACATGCTAAAGAAGGTGAGAGTGGTGAATCCCATAAAGCAACAGCAGTTATTTATGATTATAACTTGGCTGTTTGGCTACTTTCGGTTCTTG CCTGCCACGGTGAGAAAAGTAAAATTGTTATAATGGAGGCTGGAGCAGTTGAAGTCCTCACTAACAGAATCTCCAGTTGTTATTTGCAGTACAGTCAGAG TGATTTTAGTGAAGACAGCAGCATATGGATTTGTGCTCTACTGCTAGCAATTCTGTTTCAAGACAGAGACATCATACGTGCGCATGCAACCATGAAATCT ATACCAGCACTTGCAAACTTGTTGAAGTCAGAGCAGTCTGCAAACAGATATTTTGCTGCACAGGCAATAGCCAGCCTAGTGTGTAATGGTAGTCGGGGAA CACTTCTGTCTGTTGCAAATTCTGGGGCAGCAGGTGGACTCATCTCCTTACTTGGCTGTGCTGATGGTGATATATCTGATCTTCTGGAATTGTCCGAGGA GTTTGCTTTGGTATGTTATCCAGACCAAGTTGCGCTTGAGAGGTTATTCAGAGTTGAAGACATTAGAGTTGGTGCTACATCTCGCAAAGCAATACCTGCT CTTGTCGATCTGCTCAAACCAATTCCAGATCGTCCTGGGGCACCTTTTCTAGCATTAGGACTTCTAAATCAGTTAGCAAAAGACTGTCCTCCAAATAAGA CTGTTATGGTTGAATCAGGGATTTTGGAGGCCCTGACTAAGTATCTTTCACTTGGTCTGCAAGATGCAACCGAGGAAGCTGCAACTGATCTGTTAGGGAT CCTATTTAGTAGTGCTGAAATTCGGAGACATGAAGCTGCATTTGGTGCTGTCAGTCAACTTGTTGCTGTCCTGCGTATGGGTGGAAGAGCTGCAAGGTAC AGTGCTGCTAAAGCTTTGGAAAGCTTGTTTTCTGCTGATCATATCAGGAATGCAGACACTGCCCGGCAAGCTGTCCAACCCTTGGTGGAAATTCTTAATA CTGGTCTAGAGAAAGAGCAGCATGCTGCTATTGCTGCATTGGTTAGGTTATTGAGTGAAAACCCATCTAGAGCCCTTGCATTTGCAGATGTTGAAATGAA TGCGGTGGATGTCCTTTGCAGGATCCTCTCATCAAATTGCTCAACAGGGCTGAAGGGGGATGCTGCGGAGTTGTGTGGTGTTTTGTTTGGAAACACAAGA ATCAGGTCTACAATGGCTGCAGCACGCTGTGTTGAGCCTCTGGTATCTCTCCTTGTAACTGAGTTCAGTCCTGCCCAGTATTCAGTTGTCTGTGCATTAG ATAAGCTTGTTGATGATGAGCAACTGGCAGAACTGGTCGCTGCACATGGAGCAGTTATTCCTCTCGTTGGCCTTCTCTATGGTGGGAATTACATGCTTCA TGAGGCTATCTCCCGGGCACTTGTGAAGTTGGGGAAAGACAGGCCCGCATGTAAAATGGAAATGGTAAAAGCTGGAGTAATTGAAAGCATACTTGATATC CTCCATGAAGCACCAGATTTTCTCTGTGCAGCATTTGCTGAATTGCTCAGAATATTGACCAATAATGCCAGCATTGCCAAGGGGCCGTCTGCTGCAAAAG TTGTTGGGCCCCTTTTCCTGCTGCTGACAAGACCAGAATTTGGGCCCGATGGACAACATAGTGCTTTGCAGGTTCTAGTTAATATTCTGGAACATCCACA GTGCCGTGCAGATTATAACCTCACCTCTCACCAAACTATTGAGCCACTCATCCCATTGCTTGATTCTCAGGCTCCAGCAGTGCAACAGCTGGCTGCTGAG CTTTTGTCACATCTGCTCATGGAAGAACATCTTCAGAAGGATCCAGTGACACAGCAAGTAATTGGTCCTCTTATACGGGTTCTCAGTTCTGGTATACACA TCTTGCAGCAGAGAGCTGTAAAGGCTCTTGTTAGCATTGCTCTAATATGGCCAAATGAAATTGCAAAGGAGGGTGGTGTGAGTGAGTTGTCCAAAGTTAT ATTGCAAGCTGATCCTTCTCTTCCTCATGTCTTGTGGGAATCTGCTGCTTCTGTTTTGGCTAACATTTTACAGTTTAGTTCTGAATTTTATTTGGAAGTG CCTGTAGCTGTCTTGGTAAGGTTGCTCCGTTCTGGTTTGGAAAGCACGGTGGTTGGTGCACTGAATGCTCTTTTGGTGTTAGAAAGTGACGATGGAACAA GTGCTGAAGCTATGGCTGAGAGTGGTGCCATAGAGGCTCTTTTGGAACTTCTGAGAAGCCATCAGTGTGAGGAAACAGCAGCAAGGTTGCTGGAAGTATT ACTTAACAACGTGAAAATCAGAGAATCAAAAGCTACTAAAACTGCAATCTTGCCATTGTCGCAATACCTTTTAGATCCCCAAACTCAAGCACAACAGGCA AGATTACTGGCCACTTTGGCACTTGGTGATCTATTCCAGAATGAGGGCCTGGCTCGAAGCACCGATGCTGTTTCAGCTTGTCGTGCTCTAGTCAATGTCC TTGAAGAGCAACCAACAGAAGAAATGAAAGTAGTAGCAATATGTGCTTTGCAAAACCTGGTCATGTATAGCCGATCTAATAAAAGAGCTGTTGCAGAGGC TGGTGGTGTTCAAGTTGTATTGGATCTAATCGGTTCAAGTGATCCAGATACATCTGTCCAGGCTGCAATGTTTGTTAAACTTCTTTTCTCCAATCACACC ATTCAAGAGTATGCGTCCAGTGAAACAGTCAGAGCCATAACAGCTGCTATCGAAAAGGATTTATGGGCCACTGGGACTGTTAATGAGGAGTATCTCAAAT CTCTAAATGCCCTTTTTAGCAACTTCCCAAGGTTGAGAGCCACCGAGCCTGCAACGCTCAGTATACCCCATTTGGTTACATCTCTCAAGACAGGATCAGA AGCATCTCAAGAAGCTGCCTTGGATGCACTGTTTCTTCTTAGGCAAGCTTGGTCAGCATGCCCAGCTGAAGTTTCCAGAGCTCAATCCATTGCTGCTGCA GATGCAATCCCCTTGTTGCAATACTTGATTCAATCTGGCCCACCTCGATTTCAGGAGAAGGCTGAATTTCTGCTGCAGTGTTTGCCAGGGACATTGGTGG TTATTATCAAGCGTGGAAACAATATGAAGCAGTCGGTGGGGAACCCAAGTGTTTATTGCAAGCTTACCCTTGGAAATACACCACCCAGGCAAACAAAGGT TGTATCAACGGGTCCTAATCCGGAGTTTGATGAGAGCTTTTCATGGACCTTTGAGAGTCCTCCAAAAGGCCAAAAGCTTCATATCTCTTGCAAAAATAAG AGTAAAATGGGGAAGAGTTCTTTCGGAAAAGTAACAATCCAGATCGATCGGGTTGTAATGCTAGGAGCAGTAGCTGGGGAATACACCCTGATGCCAGAAA GCAAAAGTGGACCCTCGAGGAATTTGGAAATTGAATTCCAGTGGTCTAACAAGTAA
AA sequence Show only first row Show all	>Potri.005G080100.3 pacid=42803202 polypeptide=Potri.005G080100.3.p locus=Potri.005G080100 ID=Potri.005G080100.3.v4.1 annot-version=v4.1 MAATLAWRLSATNGSSLATTDLEKNGNLKTQDSEPPTPRSVMKMGVRDRTGSMEDPDGTLASVAQCIEQLRRSSSSVQEKEYALRQLRELVETRENAFSA VGSHSQAVPVLVSLLRSGSLGVKIQAATVLGSLCKENELRVKVLLGGCIPPLLGLLKSSSEEGQIAAAKTIYAVSQGGAKDHVGSKIFSTEGVVPVLWEL LRNGLKTGKLVDNLLTGALKNLSSSTEGFWSATIQAGGVDILVKLLTTGQSDTQANICFLLACMMMEDESICSKVLAAEATKQLLKLLGPGNEASVRAEA AGALKSLSAQCKDARQEIAKSNGIPALINATIAPSKEFMQGEYAQALQEHAMCALANISGGLSFVISSLGQSLESCSSPAQTADTLGALASALMIYDSKA ESTRASDPVVIEQTLVNQFNPHLPYLVQERTIEALASLYGNAILSVKLANSEAKRLLVGLITMATNEVQDELVRALLALCNNEGSLWRSLQGREGVQLLI SLLGLSSEQQQECAVALLCLLSNENDESKWAITAAGGIPPLVQILETGSAKAKEDSATILRNLCNHSEDIRACVESADAVPALLWLLKNGSLNGKEIAAK TLNHLIHKSDTATISQLTALLTSDLPESKVYVLDALRSMLSVVHLSDVLREGSAANDAIETMIKILSSTKEETQAKSASALAGIFETRKDLRESSISVKT LWSVMKLLNVESENILAESSHCLASIFLSIKENRDVAAVARDALSPLIALANSSTLEVAEQATCALANLILDGEVSKKAIPNEIIVPATRVLREGTISGK THAAAAIARLLHSRRIDNSITDCVNHAGTVLALVSFLESAIGRSAATSEALAALAILSRSEGASGHIKPAWAVLAEFPNHISPIVSSIADATPLLQDKAI EILSRLCRDQPFVLGNAVASASGCIPSVARRAIDSTSPKVKIGGAALLICAAKVSHQRVVEDLNQSNSCNHLIQSLVTMLCSADTSPSGNLVDDDREVIS IYRHAKEGESGESHKATAVIYDYNLAVWLLSVLACHGEKSKIVIMEAGAVEVLTNRISSCYLQYSQSDFSEDSSIWICALLLAILFQDRDIIRAHATMKS IPALANLLKSEQSANRYFAAQAIASLVCNGSRGTLLSVANSGAAGGLISLLGCADGDISDLLELSEEFALVCYPDQVALERLFRVEDIRVGATSRKAIPA LVDLLKPIPDRPGAPFLALGLLNQLAKDCPPNKTVMVESGILEALTKYLSLGLQDATEEAATDLLGILFSSAEIRRHEAAFGAVSQLVAVLRMGGRAARY SAAKALESLFSADHIRNADTARQAVQPLVEILNTGLEKEQHAAIAALVRLLSENPSRALAFADVEMNAVDVLCRILSSNCSTGLKGDAAELCGVLFGNTR IRSTMAAARCVEPLVSLLVTEFSPAQYSVVCALDKLVDDEQLAELVAAHGAVIPLVGLLYGGNYMLHEAISRALVKLGKDRPACKMEMVKAGVIESILDI LHEAPDFLCAAFAELLRILTNNASIAKGPSAAKVVGPLFLLLTRPEFGPDGQHSALQVLVNILEHPQCRADYNLTSHQTIEPLIPLLDSQAPAVQQLAAE LLSHLLMEEHLQKDPVTQQVIGPLIRVLSSGIHILQQRAVKALVSIALIWPNEIAKEGGVSELSKVILQADPSLPHVLWESAASVLANILQFSSEFYLEV PVAVLVRLLRSGLESTVVGALNALLVLESDDGTSAEAMAESGAIEALLELLRSHQCEETAARLLEVLLNNVKIRESKATKTAILPLSQYLLDPQTQAQQA RLLATLALGDLFQNEGLARSTDAVSACRALVNVLEEQPTEEMKVVAICALQNLVMYSRSNKRAVAEAGGVQVVLDLIGSSDPDTSVQAAMFVKLLFSNHT IQEYASSETVRAITAAIEKDLWATGTVNEEYLKSLNALFSNFPRLRATEPATLSIPHLVTSLKTGSEASQEAALDALFLLRQAWSACPAEVSRAQSIAAA DAIPLLQYLIQSGPPRFQEKAEFLLQCLPGTLVVIIKRGNNMKQSVGNPSVYCKLTLGNTPPRQTKVVSTGPNPEFDESFSWTFESPPKGQKLHISCKNK SKMGKSSFGKVTIQIDRVVMLGAVAGEYTLMPESKSGPSRNLEIEFQWSNK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G22125		POM2, CSI1	POM-POM 2, cellulose synthase-...		Potri.005G080100 [exp]	0	1
AT5G15630		IRX6, COBL4	IRREGULAR XYLEM 6, COBRA-LIKE4...		Potri.015G060100 [exp]	1.73	0.9290
AT1G16860			Ubiquitin-specific protease fa...		Potri.008G006100 [exp]	4.58	0.8873
AT3G23980		KOS1, BLI	KOLD SENSITIV 1, BLISTER (.1)		Potri.010G062000 [exp]	6.32	0.8824
AT5G66310			ATP binding microtubule motor ...		Potri.007G014800 [exp]	8.71	0.8983
AT5G50420			O-fucosyltransferase family pr...		Potri.003G073500 [exp]	9.16	0.8966	FUT13.1
AT4G18050		ABCB9, PGP9	ATP-binding cassette B9, P-gly...		Potri.001G354900 [exp]	11.83	0.8963
AT1G67510			Leucine-rich repeat protein ki...		Potri.008G176900 [exp]	12.36	0.8789
AT2G45540			WD-40 repeat family protein / ...		Potri.002G150000 [exp]	12.84	0.8686
AT2G03480		QUL2	QUASIMODO2 LIKE 2 (.1.2)		Potri.008G094800 [exp]	14.28	0.8966
AT3G14170			Plant protein of unknown funct...		Potri.003G070200 [exp]	14.49	0.8929

Compare expression of checked genes

Potri.005G080100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.