Plant FIBer expression Database

Potri.005G080200 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G39690 425 / 1e-140 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.007G087100
[exp]
907 / 0 AT4G39690 395 / 2e-129 unknown protein
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10022509
[exp]
421 / 3e-139 AT4G39690 416 / 1e-137 unknown protein
Lus10016813
[exp]
413 / 5e-137 AT4G39690 397 / 6e-131 unknown protein
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF09731 Mitofilin Mitochondrial inner membrane protein
Representative CDS sequence
>Potri.005G080200.1 pacid=42805190 polypeptide=Potri.005G080200.1.p locus=Potri.005G080200 ID=Potri.005G080200.1.v4.1 annot-version=v4.1
ATGCTTAGAAGGTCCCTTTTGGAGCTATCGAGTCGTCGTCAATCCATAAGGAGGATTCCGAGGAAGATTACTACTCAGCATGTGCCCCTATTCCTTTCTT
CGAGGAAGGAATTCTCGACCTCTTTCCAGAAAAATGCATCCCCAAACGGTGGTCCAAATGATAAATCAGAGAGGAGAGGATCTCTTTTAGTGAAAAGCTT
AGGTGCAGTTCTTGTTGTCGGGACATGTTATTATGCAGGTTGGTTAGACCCAATTATTGAATTAATTGATAAAAAGAAGCAGAGTTATGTTAACTCGGGT
GGGGATGGCATCGATCATAAAGATGTAAAAGTAGAGGAAGTGGTGTCACCCATGAGTGAAGAGGCTAATAAATTAAGCCATTTTATAGAGGAGGATGCGC
AAAAGGTTAAAAGGGAGTCAGATCTTCCTAGTGTTGAAACCAAGGAGGAGAAGGTTGAAATTCATGCTGACGTTCCTCATTTTGAAAGTAAGCATAAGGT
TGAGACTCCTACAGATCTTCCTCATGTTGAAGCTGATCAGAAGTTTGAAACTCAAACAGATCAACCTCATCATGAAACTTTAAGTGAAACAGAAAGTGAT
AATCAGTCTCAGGTACACCATGGGGCAATCTCTGTTGAAGAGAGACATGAACCAGAATTTTCGCATCATACAGGCTCTGAAGGCAGTCTTGGCATGGGGA
TCCCAGGTTTGAAAACTACTAAAGAGCCAAATGAGGGAATCCAAGTTACACAAGTACAACCTCAGGCCACGGGGGTTCCTGTAGAGAGTGAAATAAAAAC
AGTACCAACTCAGAATGTCACTACTGAAAACAGATCAGAGGCTGCCTTCAGTGAACATTCAGGAATATCAAGTCTACTTGGTTCATACCATCTCGATGAT
AACGGTGAAAAGAACATCACAACAGAGGGCCTTGGAGAACAGGCTATTGTTAGTGCCATAGAAGAACTGAATGATGGTTACATAACAAAAGATGGAAAGT
TAGTTTTGGATTTTCTCGAAGCAATTCATGCAGCTGAAAAGAGGCAAGCTGAATTGGATGCCCTTACTTTTTCTGAAGAAAAAAGAGCGCTGAAGGAGAA
GTATGAAAAAGAATTGAGAGATTCAAGGGCTAGGGAACTTATGTGTGCTGAAGAGGCAGCAATGTTGGATAAGGAAATAAAGAGAGAGATAGCCAAAGCT
GCAGCTGCAATCAAGATGCTTCAAGAAAGGATGGAAGAGAAACTTAGGGTGGAGCTTGAACAGAAGGAAAATGAATCAGAAATGAAGCTGCAAAGGTTTC
AGGAGTTAGCAAAAGCAGAATTGTCCGGTGCAATTGCAAGTGAGAAGGCAGCACATATTGAAAAGATAGCTGAAGCAAATCTCAATATTAATGCCTTGTG
CATGGCATTCTATGCAAGATCTGAAGAGTCTCGTCAGATTCACTCTGTTCACAAGCTTGCTCTGGGAGCTCTTGCATTGGAAGATGCACTTTCCAAAGGA
CTGCCAATACAGCATGAGTTAGATGCTTTAAACGCCTATCTTGAAGGCATTGATAAAGACTCACTTTTACATTTGGTTCTATCAACTCTTCCTGAAGAAA
CAAGGCACCATGGTACCGATACTTTATTGGAATTGAATCAGAAGTTTAATGTCATGAAAGGGAATCTACGACATTACATTTTGATCCCACCAGGTGGTGA
CGGCATCTTGGCTCATGCTTTGGCACATGTTGCATCCTGGTTGAGGTTTAAAGAAGTCGATCCCTCTGGTGATGGTATTGAATCTATTATTAGCCGAGTT
GAGGATTTCCTTGCTGAGGGAAAGCTCGCTGAAGCAGCAGATGCTCTCCAAAAAGGTGTCCAAGGCAGCCAGGCAGAAGAGATAGCTGGTGATTGGGTGA
GGAGAGCAAGGAATAGAGCTATCGCAGAGCAAGCTCTAACTGTACTTCAGTCGCATGCCACTTGCGTCGGCCTTACTCAATGA
AA sequence
>Potri.005G080200.1 pacid=42805190 polypeptide=Potri.005G080200.1.p locus=Potri.005G080200 ID=Potri.005G080200.1.v4.1 annot-version=v4.1
MLRRSLLELSSRRQSIRRIPRKITTQHVPLFLSSRKEFSTSFQKNASPNGGPNDKSERRGSLLVKSLGAVLVVGTCYYAGWLDPIIELIDKKKQSYVNSG
GDGIDHKDVKVEEVVSPMSEEANKLSHFIEEDAQKVKRESDLPSVETKEEKVEIHADVPHFESKHKVETPTDLPHVEADQKFETQTDQPHHETLSETESD
NQSQVHHGAISVEERHEPEFSHHTGSEGSLGMGIPGLKTTKEPNEGIQVTQVQPQATGVPVESEIKTVPTQNVTTENRSEAAFSEHSGISSLLGSYHLDD
NGEKNITTEGLGEQAIVSAIEELNDGYITKDGKLVLDFLEAIHAAEKRQAELDALTFSEEKRALKEKYEKELRDSRARELMCAEEAAMLDKEIKREIAKA
AAAIKMLQERMEEKLRVELEQKENESEMKLQRFQELAKAELSGAIASEKAAHIEKIAEANLNINALCMAFYARSEESRQIHSVHKLALGALALEDALSKG
LPIQHELDALNAYLEGIDKDSLLHLVLSTLPEETRHHGTDTLLELNQKFNVMKGNLRHYILIPPGGDGILAHALAHVASWLRFKEVDPSGDGIESIISRV
EDFLAEGKLAEAADALQKGVQGSQAEEIAGDWVRRARNRAIAEQALTVLQSHATCVGLTQ

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT4G39690 unknown protein Potri.005G080200
[exp]
0 1
AT1G05520 Sec23/Sec24 protein transport ... Potri.001G307400
[exp]
2.00 0.7250
AT4G32640 Sec23/Sec24 protein transport ... Potri.005G049100
[exp]
3.74 0.7058 CEF.1
AT2G47960 unknown protein Potri.004G040500
[exp]
5.19 0.6630
AT5G13480 FY Transducin/WD40 repeat-like su... Potri.003G197900
[exp]
14.86 0.5970
AT3G61790 Protein with RING/U-box and TR... Potri.002G171500
[exp]
19.59 0.6432
AT4G33380 unknown protein Potri.014G031900
[exp]
21.07 0.6312
AT5G17440 LUC7 related protein (.1) Potri.013G084800
[exp]
29.79 0.6092
AT1G12500 Nucleotide-sugar transporter f... Potri.001G289900
[exp]
29.84 0.6105
AT3G11330 PIRL9 plant intracellular ras group-... Potri.012G085600
[exp]
36.87 0.5919
AT3G61415 ASK21 SKP1-like 21 (.1.2) Potri.014G085400
[exp]
40.24 0.5391

Potri.005G080200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.