Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G65180 361 / 7e-121 ENTH/VHS family protein (.1.2) AT5G10060 327 / 4e-107 ENTH/VHS family protein (.1) AT3G26990 181 / 8e-51 ENTH/VHS family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G086700 [exp] 606 / 0 AT5G65180 438 / 9e-151 ENTH/VHS family protein (.1.2) Potri.005G080800 [exp] 604 / 0 AT5G65180 357 / 5e-119 ENTH/VHS family protein (.1.2) Potri.001G325700 [exp] 203 / 6e-59 AT3G26990 467 / 8e-161 ENTH/VHS family protein (.1) Potri.007G086750 [exp] 64 / 5e-13 AT5G65180 57 / 3e-11 ENTH/VHS family protein (.1.2) Potri.018G002000 [exp] 45 / 0.0001 AT4G31200 620 / 0.0 SWAP (Suppressor-of-White-APricot)/surp RNA-binding domain-containing protein (.1), SWAP (Suppressor-of-White-APricot)/surp RNA-binding domain-containing protein (.2), SWAP (Suppressor-of-White-APricot)/surp RNA-binding domain-containing protein (.3) Potri.006G279800 [exp] 45 / 0.0001 AT4G31200 579 / 0.0 SWAP (Suppressor-of-White-APricot)/surp RNA-binding domain-containing protein (.1), SWAP (Suppressor-of-White-APricot)/surp RNA-binding domain-containing protein (.2), SWAP (Suppressor-of-White-APricot)/surp RNA-binding domain-containing protein (.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020327 [exp] 227 / 1e-67 AT3G26990 297 / 4e-94 ENTH/VHS family protein (.1) Lus10005665 [exp] 227 / 1e-67 AT3G26990 301 / 1e-95 ENTH/VHS family protein (.1) Lus10035182 [exp] 194 / 2e-55 AT3G26990 469 / 7e-162 ENTH/VHS family protein (.1) Lus10032013 [exp] 170 / 8e-47 AT3G26990 421 / 3e-143 ENTH/VHS family protein (.1) Lus10008260 [exp] 42 / 0.001 AT4G31200 586 / 0.0 SWAP (Suppressor-of-White-APricot)/surp RNA-binding domain-containing protein (.1), SWAP (Suppressor-of-White-APricot)/surp RNA-binding domain-containing protein (.2), SWAP (Suppressor-of-White-APricot)/surp RNA-binding domain-containing protein (.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF04818 [poplar] [flax] CID CID domain
Representative CDS sequence Show only first row Show all	>Potri.005G080600.3 pacid=42803512 polypeptide=Potri.005G080600.3.p locus=Potri.005G080600 ID=Potri.005G080600.3.v4.1 annot-version=v4.1 ATGAATAGTGCATTTAGTGAACAGATACTTGCAGATAAGCTTTCCAAGCTCAACGGCACCCAGCAGTGTATCGAGTCTTTGTCTCGGTGGTGCATACATC ACCGTAGCGAAGCAGAATTAGTTGTTGAGACATGGAATAAACAGTTCCACAACTCAGATATGCTCAAGAAAGTACCTCTATTGTATCTTGCAAATGACAT CCTTCAGAACAGTAAGCGGAAAGGAAATGAATTCGTTGCGGAGTTTTGGAAAGTTCTTCCTGCAGCGCTAAAAAATGTAGTTGAAAAAGGTGATGATCGT GACAAGAATGTCGTCTCTAGATTGGTAAATATATGGGAAGAAAGGACAGTATTTGGGTCACATGCCCGGAGCCTCAGAGAGGTAATGCTTGGAGAAGATG TACCTCCACCCTTGGAGCTCAGCAAAAAACGTTCACGCACTGTGAAAAATACAAAGCGAGATTCACGATCCATTAGAACGAAATTTTCCATTGGAGGTGC TGCTGAAAAAATAGTATCGGCATTCAATTTGATGGTTAGTGAGCAGCCCAATGAAGAGGCAGGGATGAGGAATTGCAAGTCTGCAGTTCGTCGTGTGAGG AATATGGAGAAAGATGTTGATAGTGCCTGTAGTAATAACGATAAAGATCCAAAACGAAAAACATTGGCTAAGGAGCTAGAGGATAATGAGAATCTTTTGA AACGAAGTATTGAGAAACTTAAATCAGCTAAAGCAAGTAGAGCAGCGCTTGTCTCTCAGTTAGAAGAAGCTCTACAGGAACAGGAATCTGAACTGGAGGG AGTTCGAACTCAGATACAGGATGCACAGGCACAAGTAGAGGAAGCCAGCAAGATGCGAAGGCGGCTTAATGGTGAAGTATTAAAAGCATCTGGTACAACT ACAGTACCAGTTGATTCAAATGCAAAAGCAGGACAAACACCCAAGAGGACAGCTGCAGCTATTGCTGCGGAGGTTGCAGAGAAGCTTGCAGCTTCCTCCT CTTCTCAAATGATCATGCACGCTGTTCTCTCTACATTTGCCGCTGAAGAAGCAAAGAATGCTCCAAAACCTGAAACCTCCTTACCTGTTTCAGATCCAAA TGTTTTTATGCTAGCTCAGCCACTTACTGCTCCAACAACACATTCGTACCAGTCAGTTTTGTTCACCCAACCTACAATGCAGAACCAGACTCCGACCACT CAATCTCAATTTCACATTCTTCCCAACCCATCCTCTCAGCCTTATATACAGCCAGGGGGAGGGATTGCAACCCCGTATGCTTATGGTAACTTTTCTGTGT TGCCTCCAGGACCACCCCCACCCCCACCCTATAAGGTAAGTCAAACCGTGCCCTTGGCTCAACAACCATCGCAAATGCCTCAGCAGCAACCGTTACCAGT GGCACAACAGGAGGCCCCAATAAACCAGAAACAACCCAGGTCTTTAACTCAACAAACCCTGGGTGCTAATTTCAGACCTCAACCACCTGGATTGGAGTAC TATGGCCACCCATCTCATTCTTAG
AA sequence Show only first row Show all	>Potri.005G080600.3 pacid=42803512 polypeptide=Potri.005G080600.3.p locus=Potri.005G080600 ID=Potri.005G080600.3.v4.1 annot-version=v4.1 MNSAFSEQILADKLSKLNGTQQCIESLSRWCIHHRSEAELVVETWNKQFHNSDMLKKVPLLYLANDILQNSKRKGNEFVAEFWKVLPAALKNVVEKGDDR DKNVVSRLVNIWEERTVFGSHARSLREVMLGEDVPPPLELSKKRSRTVKNTKRDSRSIRTKFSIGGAAEKIVSAFNLMVSEQPNEEAGMRNCKSAVRRVR NMEKDVDSACSNNDKDPKRKTLAKELEDNENLLKRSIEKLKSAKASRAALVSQLEEALQEQESELEGVRTQIQDAQAQVEEASKMRRRLNGEVLKASGTT TVPVDSNAKAGQTPKRTAAAIAAEVAEKLAASSSSQMIMHAVLSTFAAEEAKNAPKPETSLPVSDPNVFMLAQPLTAPTTHSYQSVLFTQPTMQNQTPTT QSQFHILPNPSSQPYIQPGGGIATPYAYGNFSVLPPGPPPPPPYKVSQTVPLAQQPSQMPQQQPLPVAQQEAPINQKQPRSLTQQTLGANFRPQPPGLEY YGHPSHS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G65180			ENTH/VHS family protein (.1.2)		Potri.005G080600 [exp]	0	1
AT2G48110		MED33B, REF4	reduced epidermal fluorescence...		Potri.002G215600 [exp]	1.73	0.8267
AT3G19860	bHLH	bHLH121	basic Helix-Loop-Helix 121, ba...		Potri.005G113400 [exp]	2.44	0.8054
AT5G37370		ATSRL1	PRP38 family protein (.1.2.3.4...		Potri.004G075700 [exp]	6.24	0.7374
AT4G39680			SAP domain-containing protein ...		Potri.005G080500 [exp]	6.48	0.8295
AT4G03090			sequence-specific DNA binding;...		Potri.014G135700 [exp]	6.63	0.8219
AT3G19840		ATPRP40C	pre-mRNA-processing protein 40...		Potri.010G170400 [exp]	6.92	0.8367
AT2G15980			Tetratricopeptide repeat (TPR)...		Potri.004G149400 [exp]	9.48	0.7848
AT5G25060			RNA recognition motif (RRM)-co...		Potri.018G017200 [exp]	14.96	0.8026
AT5G13020		AtEML3, ACK1	EMSY-like 3, Emsy N Terminus (...		Potri.003G212300 [exp]	17.34	0.7327
AT2G44430			DNA-binding bromodomain-contai...		Potri.001G229300 [exp]	20.24	0.7337

Compare expression of checked genes

Potri.005G080600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.