Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G65180 358 / 4e-119 ENTH/VHS family protein (.1.2) AT5G10060 334 / 1e-109 ENTH/VHS family protein (.1) AT3G26990 180 / 2e-50 ENTH/VHS family protein (.1) AT4G31200 45 / 0.0001 SWAP (Suppressor-of-White-APricot)/surp RNA-binding domain-containing protein (.1), SWAP (Suppressor-of-White-APricot)/surp RNA-binding domain-containing protein (.2), SWAP (Suppressor-of-White-APricot)/surp RNA-binding domain-containing protein (.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G080600 [exp] 637 / 0 AT5G65180 360 / 2e-120 ENTH/VHS family protein (.1.2) Potri.007G086700 [exp] 632 / 0 AT5G65180 438 / 9e-151 ENTH/VHS family protein (.1.2) Potri.001G325700 [exp] 207 / 5e-60 AT3G26990 467 / 8e-161 ENTH/VHS family protein (.1) Potri.007G086750 [exp] 73 / 4e-16 AT5G65180 57 / 3e-11 ENTH/VHS family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020327 [exp] 232 / 2e-69 AT3G26990 297 / 4e-94 ENTH/VHS family protein (.1) Lus10005665 [exp] 232 / 4e-69 AT3G26990 301 / 1e-95 ENTH/VHS family protein (.1) Lus10035182 [exp] 198 / 6e-57 AT3G26990 469 / 7e-162 ENTH/VHS family protein (.1) Lus10032013 [exp] 176 / 9e-49 AT3G26990 421 / 3e-143 ENTH/VHS family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF04818 [poplar] [flax] CID CID domain
Representative CDS sequence Show only first row Show all	>Potri.005G080800.2 pacid=42805260 polypeptide=Potri.005G080800.2.p locus=Potri.005G080800 ID=Potri.005G080800.2.v4.1 annot-version=v4.1 ATGAATAGTACATTTAGTGAAGAGACACTTGCAGATAACCTTTCCAAGGTCAATGGTACCCAGCAATGTATTGAATCTTTGTCGCGCTGGTGCATAGTTC ACCGAAGCAAAGCAGAATCTGTTGTTGAGGCATGGGACAAACAGTTCCGCAACTCAGCTATGCTCCAGAAAGTACCTCTATTGTATCTTGCAAATGACAT CCTACAGAACAGTAAGAAGAAAGGAAGCGAATTTGTTAATGAGTTTTGGAAAGTTCTTCCTGCAGCGCTAAAAAATATAGTCAAGAAAGGTGATGACCGT GGCAAGAATGTCGTCTCTAGATTGGTAAATATATGGGAAGAAAGGACAGTGTTTGGGTCACGTGCTCGGAGTCTCAAAGAGGTGATGCTTGGAGAAGATG CTCCTCCACCCTTGGAGTTGAGCAAAAAACGTTCACGCTCTGTGAAAAATACAAAACGAGATTCACGATCCATTAGAACGAAATTGTCTATTGGAGGTGC TGCTGAAAAACTAGTATCAGCATTTAACTTGGTGGTTAGTGAGCGGCCCAATGAAGAGGCAGAGATGAGTAATTGCAAGTCTGCAGTTTGTCGTACGAGG GATATGAAGAAAGATGTTGATATTGCCTGTAGTAATAATGATAAAGATCCAACACGAAAAACTTTGGCCAAGAAACTGGAGAATGAAGAGAATCTTTTGA AACGAAGTATTGAGAAACTTAAATCAGTTGAAGCATGTAGAGTAGCGCTTGTCTCACAGTTAAAAGAATCTTTACAGGAACAGGAATCTGAACTGGAGGA AGTTCGAGCTCTGAGGCAGGTCGCACAGGCACAAGTAGAGGAAGCCAGCAAAATGCGAAGGTTGCTTATTGGTGAAGAAGTATCTAAAGCATCTACAGTA ACTACAGTACCAGTTGATTCAAATGCAAAAGCAGGACAAGCACCTAAGAGGACAGCTGCAGCTATTGCTGCCGAGGTTGCAGAGAAGCTTGCAGCTTCCT CCTCTTCTCAAATGATCATGCACGCTGTTCTCTCTACATTTGCAGCTGAAGAAGCAAAAAATGCTCAATTAACGAAGGCCCCAACACTGTCAAATTCATA TGCATCCATGCCCGTCCAATCATTGTCAAAACCGGAAAACTCATTGCCCGTATCAGATTCAAATGTTTTTATGCCAGCACAGCCACTTGCTGCTCCAACA ACACACTCATATCAGCCAGTTTTGTTGCCCCAGCCTACTATGCCGAACCAGACCCCAACCACTCAAGCTCAATTTAACCCATCCTCCCAGCAATATTTAC AGCCAGCAGGTGGGATCATGACCCCATATGCTTATGGTAACACCTCTCCCTTACCCCCAGGACCACCCCCACCCCCACCCTACCAGGCAAGTTCAATGGT GCCTATGGCGCATCAACCATCACAAATGCCACAGCAGCAACCATTATCATTGGCACAGCAGCGGAACATAATAAACCAGCAACAACCAATGTCTTTAACT CAACAAACTCTGGGTGCTAATTTCAGGCCTCATCAACCACCTGTAATGGAGTACTATGCCCACCCTTCTCATTCCTAG
AA sequence Show only first row Show all	>Potri.005G080800.2 pacid=42805260 polypeptide=Potri.005G080800.2.p locus=Potri.005G080800 ID=Potri.005G080800.2.v4.1 annot-version=v4.1 MNSTFSEETLADNLSKVNGTQQCIESLSRWCIVHRSKAESVVEAWDKQFRNSAMLQKVPLLYLANDILQNSKKKGSEFVNEFWKVLPAALKNIVKKGDDR GKNVVSRLVNIWEERTVFGSRARSLKEVMLGEDAPPPLELSKKRSRSVKNTKRDSRSIRTKLSIGGAAEKLVSAFNLVVSERPNEEAEMSNCKSAVCRTR DMKKDVDIACSNNDKDPTRKTLAKKLENEENLLKRSIEKLKSVEACRVALVSQLKESLQEQESELEEVRALRQVAQAQVEEASKMRRLLIGEEVSKASTV TTVPVDSNAKAGQAPKRTAAAIAAEVAEKLAASSSSQMIMHAVLSTFAAEEAKNAQLTKAPTLSNSYASMPVQSLSKPENSLPVSDSNVFMPAQPLAAPT THSYQPVLLPQPTMPNQTPTTQAQFNPSSQQYLQPAGGIMTPYAYGNTSPLPPGPPPPPPYQASSMVPMAHQPSQMPQQQPLSLAQQRNIINQQQPMSLT QQTLGANFRPHQPPVMEYYAHPSHS

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G65180			ENTH/VHS family protein (.1.2)		Potri.005G080800 [exp]	0	1
AT4G36920	AP2_ERF	FL1, FLO2, AP2	FLORAL MUTANT 2, FLOWER 1, APE...		Potri.007G046200 [exp]	5.19	0.8045	AP2.15,RAP2
AT5G07890			myosin heavy chain-related (.1...		Potri.015G048900 [exp]	9.79	0.7093
					Potri.003G193100 [exp]	10.58	0.7057
AT3G25680			unknown protein		Potri.010G131000 [exp]	10.95	0.6906
AT5G58160			actin binding (.1)		Potri.018G108000 [exp]	15.68	0.7225
AT3G09850			D111/G-patch domain-containing...		Potri.006G189501 [exp]	15.87	0.7378
AT1G75080	BZR	BZR1	BRASSINAZOLE-RESISTANT 1, Bras...		Potri.005G126400 [exp]	15.96	0.7057
AT1G21980		ATPIPK1, ATPIP5...	phosphatidylinositol-4-phospha...		Potri.002G088100 [exp]	20.78	0.7184	Pt-PIP5.2
AT2G02970			GDA1/CD39 nucleoside phosphata...		Potri.009G157500 [exp]	21.21	0.7032
AT4G36580			AAA-type ATPase family protein...		Potri.005G122300 [exp]	21.97	0.7016

Compare expression of checked genes

Potri.005G080800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.